View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1511_low_108 (Length: 302)
Name: NF1511_low_108
Description: NF1511
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1511_low_108 |
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Alignment Details
Target: chr8 (Bit Score: 240; Significance: 1e-133; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 28 - 286
Target Start/End: Original strand, 15873912 - 15874171
Alignment:
| Q |
28 |
gtacactgaacgagcaaaatcaagtagatgaaagggcttaggattttccaatttgactattaccattccaagtcgtttggattcacccatatcaaaagaa |
127 |
Q |
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| T |
15873912 |
gtacactgaacgagcaaaatcaagtatatgaaagggcttaggattttccaatttgactattaccattccaagtcgtttggattcacccatatcaaaagaa |
15874011 |
T |
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| Q |
128 |
ttgttaattaaaaattccaaatcaatacccatttcttcgcatagaatctcaatcattattctt-ggaagttgattctccaacaataaagtatctctccat |
226 |
Q |
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| T |
15874012 |
ttgttaattaaaaattccaaatcaatacccatttcttcgcatagaatctcaagcattattcttgggaagttgattctccaacaataaagtatctctccat |
15874111 |
T |
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| Q |
227 |
atgtgcatcagttggtcaaacttaaggtttagggcatccgggcattggtcatcaacattt |
286 |
Q |
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| T |
15874112 |
atgtgcatcagttggtcaaacttaaggtttagggcattcgggcattggtcatcaacattt |
15874171 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 28 - 287
Target Start/End: Complemental strand, 15900156 - 15899897
Alignment:
| Q |
28 |
gtacactgaacgagcaaaatcaagtagatgaaagggcttaggattttccaatttgactattaccattccaagtcgtttggattcacccatatcaaaagaa |
127 |
Q |
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| T |
15900156 |
gtacactgaacgaccaaaatcaagtaaatgaaagggcttatgattttccaattggagcattgccattccaagtcgtttgcatgcacccattgcaaaagaa |
15900057 |
T |
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| Q |
128 |
ttgttaattaaaaattccaaatcaatacccatttcttcgcatagaatctcaatcattattcttggaagttgattctccaacaataaagtatctctccata |
227 |
Q |
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| T |
15900056 |
ttgttaattaaaaaatccaaatcaacactcgtttcttcgcatagaatctcaagcattatttttggaagttgattctccaacaaaaaagtatctctccata |
15899957 |
T |
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| Q |
228 |
tgtgcatcagttggtcaaacttaaggtttagggcatccgggcattggtcatcaacatttt |
287 |
Q |
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| T |
15899956 |
tgtgcatcagttggtcaaacttaaggtttagggcatccgggcattggtcatcaacatttt |
15899897 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 28 - 287
Target Start/End: Complemental strand, 15921184 - 15920925
Alignment:
| Q |
28 |
gtacactgaacgagcaaaatcaagtagatgaaagggcttaggattttccaatttgactattaccattccaagtcgtttggattcacccatatcaaaagaa |
127 |
Q |
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||||| ||||||||||||||| ||||||||| ||||||||| ||||||||||| || ||||||||||| |||||| | ||||| || | | || |
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| T |
15921184 |
gtacaatgaacgagcaaaatcgagtagatgacagggcttagtattttccaattgaaccattaccattccgcatcgtttacctcgacccaaattatcataa |
15921085 |
T |
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| Q |
128 |
ttgttaattaaaaattccaaatcaatacccatttcttcgcatagaatctcaatcattattcttggaagttgattctccaacaataaagtatctctccata |
227 |
Q |
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| T |
15921084 |
ttgttaattaaaaatcccaaatcataacccgcttctttgcatagaatctcaagcattttgtttggaagctggttctctaacaaattagtatctctccata |
15920985 |
T |
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| Q |
228 |
tgtgcatcagttggtcaaacttaaggtttagggcatccgggcattggtcatcaacatttt |
287 |
Q |
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| T |
15920984 |
tgtgcatcagttggtcaaacttaaggtttagggcatccgggcattggtcatcaacatttt |
15920925 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 126 - 258
Target Start/End: Original strand, 14060426 - 14060558
Alignment:
| Q |
126 |
aattgttaattaaaaattccaaatcaatacccatttcttcgcatagaatctcaatcattattcttggaagttgattctccaacaataaagtatctctcca |
225 |
Q |
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||||||||| |||||| | ||||||||| || |||| | ||||| |||||||| |||| ||||||||| ||||| ||||| || ||||||||| |
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| T |
14060426 |
aattgttaactaaaaagttcaaatcaatgcctctttcattgcatataatctcaagcatttggtatggaagttggttctctaacaacgaaacatctctcca |
14060525 |
T |
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| Q |
226 |
tatgtgcatcagttggtcaaacttaaggtttag |
258 |
Q |
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| T |
14060526 |
tatatacatcaattggtcaaacttaagatttag |
14060558 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 190 - 287
Target Start/End: Original strand, 14049119 - 14049216
Alignment:
| Q |
190 |
tggaagttgattctccaacaataaagtatctctccatatgtgcatcagttggtcaaacttaaggtttagggcatccgggcattggtcatcaacatttt |
287 |
Q |
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| T |
14049119 |
tggaagttggttctccaacaacttaacatctctccatatgtacatcaattgatcaaacttaagatttagcccttcaggatattggtcatcgacatttt |
14049216 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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