View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1511_low_109 (Length: 301)
Name: NF1511_low_109
Description: NF1511
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1511_low_109 |
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Alignment Details
Target: chr8 (Bit Score: 250; Significance: 1e-139; HSPs: 9)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 18 - 292
Target Start/End: Complemental strand, 33006078 - 33005804
Alignment:
| Q |
18 |
atgcacctatcccagccaccctcaaattacttgaatctcttccttcaaccatacactgcactttcctccctccaatnnnnnnncaagacctaccacaaga |
117 |
Q |
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| T |
33006078 |
atgcacctatcccagccaccctcaaattacttgaatctcttccttcaaccatacactgcactttcctccctccaataaaaaaacaagacctaccacaaga |
33005979 |
T |
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| Q |
118 |
agttaccatgcaacttgaacttggtgttactaaatccatgccatcttttcgcgaatcgttgagtttgctttgttcaatttcaaccacaccggttgtagca |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
33005978 |
agttaccatgcaacttgaacttggtgttactaaatccatgccatcttttcgcgaatcgttgagtttgctttgttcaacttcaaccacaccggttgtagca |
33005879 |
T |
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| Q |
218 |
atagttgttgatccttttgcaaaccaagcattagaaatagcgaaagagttcaacatcttatctttcatgtacttc |
292 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33005878 |
atagttgttgatccttttgcaaaccaagcattagaaatagcgaaagagttcaacatcttatctttcatgtacttc |
33005804 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 18 - 282
Target Start/End: Original strand, 3707005 - 3707272
Alignment:
| Q |
18 |
atgcacctatcccagccaccctcaaattacttgaatctcttccttcaaccatacactgcactttcctccctccaatnnnnnnncaagacctaccacaaga |
117 |
Q |
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||||||||||||| |||||||||||||||||||| |||||||||||| ||||| ||||| ||||||||||||||| | |||| | ||||| || |
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| T |
3707005 |
atgcacctatccctgccaccctcaaattacttgagtctcttccttcatccataagctgcagtttcctccctccaataaacaaactagacttcccacacga |
3707104 |
T |
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| Q |
118 |
agttaccatgcaacttgaacttggtgttactaaatccatgccatcttttcgcgaatcgttgagtttgctttgttcaatttcaac---cacaccggttgta |
214 |
Q |
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| T |
3707105 |
tgttggcatggaaattgaactcgcggtggttcaatccatgccatctcttcgcaactcgttgaggttactgtgttcaacttcaacatgcacaccagtgtca |
3707204 |
T |
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| Q |
215 |
gcaatagttgttgatccttttgcaaaccaagcattagaaatagcgaaagagttcaacatcttatcttt |
282 |
Q |
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| T |
3707205 |
gcattggttgttgatccttttgcaagtcaagcattagaaatagctaaagacttgaacctcttatcttt |
3707272 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 18 - 292
Target Start/End: Complemental strand, 3778851 - 3778574
Alignment:
| Q |
18 |
atgcacctatcccagccaccctcaaattacttgaatctcttccttcaaccatacactgcactttcctccctccaatnnnnnnncaagacctaccacaaga |
117 |
Q |
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|
||||||||||||| |||||||||||||||||||| |||||||||||| ||||| |||||||||||||||||||||| |||||| | ||||| || |
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| T |
3778851 |
atgcacctatccctgccaccctcaaattacttgagtctcttccttcatccataaactgcactttcctccctccaataaacaaacaagacttgccacacga |
3778752 |
T |
|
| Q |
118 |
agttaccatgcaacttgaacttggtgttactaaatccatgccatcttttcgcgaatcgttgagtttgctttgttcaatttcaac---cacaccggttgta |
214 |
Q |
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||| | || || ||||||| | || | |||||||||||||| |||| |||||||| || || ||||||| |||||| ||||||||| | |
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| T |
3778751 |
tgttgtcttggaaattgaactcgcggtggttcaatccatgccatctcttcgtagctcgttgaggttactgtgttcaacttcaacatgcacaccggtatca |
3778652 |
T |
|
| Q |
215 |
gcaatagttgttgatccttttgcaaaccaagcattagaaatagcgaaagagttcaacatcttatctttcatgtacttc |
292 |
Q |
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|| | ||||||||||||||||||| || |||||||||||||| ||||| || ||| ||||||||||| | |||||| |
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| T |
3778651 |
gctttggttgttgatccttttgcaagtcatgcattagaaatagcaaaagacttaaacctcttatctttcgtatacttc |
3778574 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 18 - 93
Target Start/End: Complemental strand, 3771190 - 3771115
Alignment:
| Q |
18 |
atgcacctatcccagccaccctcaaattacttgaatctcttccttcaaccatacactgcactttcctccctccaat |
93 |
Q |
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||||||| ||||| ||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||| |
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| T |
3771190 |
atgcaccaatccctgccaccctcaaattacttgaatctcttccttcatccataaactgcactttcctccctccaat |
3771115 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 18 - 91
Target Start/End: Original strand, 3700324 - 3700397
Alignment:
| Q |
18 |
atgcacctatcccagccaccctcaaattacttgaatctcttccttcaaccatacactgcactttcctccctcca |
91 |
Q |
| |
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||||||||||||| ||||||||||||||||||||||||||||||||| | ||| |||||||||||||||||||| |
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| T |
3700324 |
atgcacctatccctgccaccctcaaattacttgaatctcttccttcatcaataaactgcactttcctccctcca |
3700397 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 18 - 93
Target Start/End: Original strand, 3718514 - 3718589
Alignment:
| Q |
18 |
atgcacctatcccagccaccctcaaattacttgaatctcttccttcaaccatacactgcactttcctccctccaat |
93 |
Q |
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| T |
3718514 |
atgcaccaatccctgccaccctcaaattacttgagtctcttccgtcatccataaaatgcactttcctccctccaat |
3718589 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 150 - 292
Target Start/End: Original strand, 3718646 - 3718791
Alignment:
| Q |
150 |
aatccatgccatcttttcgcgaatcgttgagtttgctttgttcaatttcaac---cacaccggttgtagcaatagttgttgatccttttgcaaaccaagc |
246 |
Q |
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|||||||||||| | |||| | | |||||| || ||||||||||||||||| |||||| || |||| | ||||||||||||||||||| ||||| |
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| T |
3718646 |
aatccatgccatgtcttcggaacttgttgaggttactttgttcaatttcaacatgcacaccagtgtcagcattggttgttgatccttttgcaagtcaagc |
3718745 |
T |
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| Q |
247 |
attagaaatagcgaaagagttcaacatcttatctttcatgtacttc |
292 |
Q |
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|||||||||||| ||||| || ||| |||||||||| || |||||| |
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| T |
3718746 |
attagaaatagctaaagacttgaacctcttatcttttatatacttc |
3718791 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 236 - 291
Target Start/End: Original strand, 3700548 - 3700603
Alignment:
| Q |
236 |
gcaaaccaagcattagaaatagcgaaagagttcaacatcttatctttcatgtactt |
291 |
Q |
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|||| |||||||||||||||||| |||||||||||| ||||||||||||| ||||| |
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| T |
3700548 |
gcaacccaagcattagaaatagcaaaagagttcaacctcttatctttcatatactt |
3700603 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 212 - 282
Target Start/End: Complemental strand, 3770993 - 3770923
Alignment:
| Q |
212 |
gtagcaatagttgttgatccttttgcaaaccaagcattagaaatagcgaaagagttcaacatcttatcttt |
282 |
Q |
| |
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|||||| | ||||||||||||| ||||| ||||||||||||||||| ||||| | |||||||||||||| |
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| T |
3770993 |
gtagcattggttgttgatccttatgcaagtcaagcattagaaatagcaaaagactagaacatcttatcttt |
3770923 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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