View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1511_low_11 (Length: 652)
Name: NF1511_low_11
Description: NF1511
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1511_low_11 |
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Alignment Details
Target: chr2 (Bit Score: 546; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 546; E-Value: 0
Query Start/End: Original strand, 11 - 636
Target Start/End: Original strand, 23971493 - 23972117
Alignment:
| Q |
11 |
catagggatgtctggaaaatcttgcttggtaatgacaatggcacctgtgatagtgagtctgaatcgatgatcacaggccttgacaacggtgtcattggtg |
110 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||| || |
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| T |
23971493 |
catagggatgtctggaaaatcttgcttggtaatgacaatggcatctgtgatagtgagtctgaat-gatgatcacaggccttgacaacggtgtcattgttg |
23971591 |
T |
|
| Q |
111 |
ctaaccttaaagttctccctttcataagtttggttcaaaatcagctgaggtttaaatgtattgagtaattctttagggagcgtaatatgaattatatcac |
210 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||| ||||||||||| |||||||| ||||||||||||||||||||||||||| ||||| |
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| T |
23971592 |
ctaaccttaaagttctccatttcataagtttggttcaaaatcagtcgaggtttaaatttattgagttattctttagggagcgtaatatgaattacatcac |
23971691 |
T |
|
| Q |
211 |
cctgtatggttgtaaatttgtaagtagtcagtaaagtgttattgaaatgaacttattgaaagaatcaaatagatagaaaagaaaaccatacctcagcatc |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||| |
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| T |
23971692 |
cctgtatggttgtaaatttgtaagtagtcagtaaagtgttattgaaatgaacttattgaatgaatcaaatagatagaaaagaaaaccatacctcaacatc |
23971791 |
T |
|
| Q |
311 |
cttaacgatcatttcatgatgttcacttttgtatttgccaataactggccaatgatcaacaatcctcacaacaaggtcccacacatctttactctgatca |
410 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
23971792 |
cttaacgatcatttcaagatgttcacttttgtatttgccaataactggccaaagatcaacaatcctcacaacaaggacccacacatctttactctgatca |
23971891 |
T |
|
| Q |
411 |
atgtctattatcttatcaaaaccacgagcgacttcttcatcatcttccattcttcacagataaacaacaaaaatgacaaacaaagcataatgtcaagtac |
510 |
Q |
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| T |
23971892 |
atgtctattatcttatcaaaaccacgagcgacttcttcatcatcttccattcttcacagataaacaacaaaaatgacaaacaacgcataatgtcaagtac |
23971991 |
T |
|
| Q |
511 |
ataactaaacaacaataagagatccttaaaagaatgagattatttaaagggtagcataacataactttatgatctttaaacatcataatagatgcaagat |
610 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| |||||||||||| | |||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
23971992 |
ataactaaacaacaataagagatccttaaaagaatgggattatttaaagagcagcataacataactttatgatctttaaacatcataacagatgcaagat |
23972091 |
T |
|
| Q |
611 |
aaacacatacttttagtgatattaaa |
636 |
Q |
| |
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|||||||||||||||||||||||||| |
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| T |
23972092 |
aaacacatacttttagtgatattaaa |
23972117 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 328; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 11 - 482
Target Start/End: Complemental strand, 33538808 - 33538337
Alignment:
| Q |
11 |
catagggatgtctggaaaatcttgcttggtaatgacaatggcacctgtgatagtgagtctgaatcgatgatcacaggccttgacaacggtgtcattggtg |
110 |
Q |
| |
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|||||||||||||||||||||||||||| |||||||| ||||||||||||| |||||||| ||||||||||||||||||||||||||| |||||||| || |
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| T |
33538808 |
catagggatgtctggaaaatcttgcttgctaatgacagtggcacctgtgattgtgagtctaaatcgatgatcacaggccttgacaacgctgtcattgttg |
33538709 |
T |
|
| Q |
111 |
ctaaccttaaagttctccctttcataagtttggttcaaaatcagctgaggtttaaatgtattgagtaattctttagggagcgtaatatgaattatatcac |
210 |
Q |
| |
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|| ||||||||||||||| ||||||||||||||||||||| ||||||||||||||||| |||||| |||||||| ||||||||||||||||||| |||| |
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| T |
33538708 |
ctcaccttaaagttctccatttcataagtttggttcaaaaacagctgaggtttaaatgcattgagaaattctttcgggagcgtaatatgaattacatcag |
33538609 |
T |
|
| Q |
211 |
cctgtatggttgtaaatttgtaagtagtcagtaaagtgttattgaaatgaacttattgaaagaatcaaatagatagaaaagaaaaccatacctcagcatc |
310 |
Q |
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||||||||||||||||||| ||||||||||||||| | |||||||||||| ||||||||||||| ||||||| |||||||||| | ||| |||||||| |
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| T |
33538608 |
cctgtatggttgtaaattttgaagtagtcagtaaagcgatattgaaatgaagttattgaaagaatgaaatagactgaaaagaaaagcctacttcagcatc |
33538509 |
T |
|
| Q |
311 |
cttaacgatcatttcatgatgttcacttttgtatttgccaataactggccaatgatcaacaatcctcacaacaaggtcccacacatctttactctgatca |
410 |
Q |
| |
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||||| |||||||||| || |||||||||||||||||||||||| |||||| ||||||||||||||||| ||||| ||||||||||||||||||||||| |
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| T |
33538508 |
cttaatgatcatttcaagactttcacttttgtatttgccaataaccggccaaagatcaacaatcctcacagcaaggacccacacatctttactctgatca |
33538409 |
T |
|
| Q |
411 |
atgtctattatcttatcaaaaccacgagcgacttcttcatcatcttccattcttcacagataaacaacaaaa |
482 |
Q |
| |
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|||||| ||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||| |
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| T |
33538408 |
atgtctgttatcttatcaaaaccacgagcgacctcttcatcatcttccattcttcatagataaacaacaaaa |
33538337 |
T |
|
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