View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1511_low_112 (Length: 295)
Name: NF1511_low_112
Description: NF1511
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1511_low_112 |
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Alignment Details
Target: chr5 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 20 - 285
Target Start/End: Complemental strand, 13477472 - 13477208
Alignment:
| Q |
20 |
gagggatggtagaatagaagtagaggtgagtgacaataaaggggaatacaacacaaaaacagcagtacaacagaactgggtgctctgttacactgccaac |
119 |
Q |
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| T |
13477472 |
gagggatggtagaatagaagtagaggtgagtgacaataaaggggaacacaacacaaaaacagcagtacaacagaactgggtgctctgttacactgccaac |
13477373 |
T |
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| Q |
120 |
acaatgtctaatttctttctttgatacgtcccttttcaaccaaagattaactgcacctctctttacttttactttccattccatcatcaaagcctctaac |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13477372 |
acaatgtctaatttctttctttgatacgtcccttttcaaccaaagattaactgcacctctctttacttttactttccattccatcatcaaagcctctaac |
13477273 |
T |
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| Q |
220 |
aaaaacctcacacgtgtgatattcttttatatcctttaaataacatcattaactatttagcctttg |
285 |
Q |
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|||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||| |||| |
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| T |
13477272 |
aaaaacctcacacgtgtgatattcttttatattc-ttaaataacatcattaactatttagcttttg |
13477208 |
T |
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