View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1511_low_114 (Length: 291)

Name: NF1511_low_114
Description: NF1511
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1511_low_114
NF1511_low_114
[»] chr6 (3 HSPs)
chr6 (15-271)||(3366216-3366472)
chr6 (216-268)||(3370441-3370493)
chr6 (21-69)||(1439496-1439544)
[»] chr3 (2 HSPs)
chr3 (17-91)||(21481544-21481618)
chr3 (44-102)||(19680578-19680636)
[»] chr5 (4 HSPs)
chr5 (44-90)||(18515338-18515384)
chr5 (44-90)||(9439212-9439258)
chr5 (18-76)||(35140575-35140633)
chr5 (45-102)||(33331661-33331718)
[»] chr2 (3 HSPs)
chr2 (44-98)||(2765054-2765108)
chr2 (45-90)||(42479284-42479329)
chr2 (45-100)||(33834306-33834361)
[»] chr1 (2 HSPs)
chr1 (44-92)||(6099487-6099535)
chr1 (44-90)||(42929465-42929511)
[»] chr4 (5 HSPs)
chr4 (44-99)||(55774343-55774398)
chr4 (44-99)||(55838552-55838607)
chr4 (45-102)||(13509662-13509719)
chr4 (50-102)||(29514933-29514985)
chr4 (44-92)||(48629103-48629151)
[»] chr8 (4 HSPs)
chr8 (45-102)||(28218758-28218815)
chr8 (17-86)||(39096113-39096182)
chr8 (18-102)||(41877034-41877116)
chr8 (18-76)||(5049293-5049351)
[»] scaffold0564 (1 HSPs)
scaffold0564 (44-90)||(4966-5012)


Alignment Details
Target: chr6 (Bit Score: 241; Significance: 1e-133; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 15 - 271
Target Start/End: Original strand, 3366216 - 3366472
Alignment:
Q  15 tattgaaatgagagatattctagttactacttatgtataagcatatttcagattatataatcggaacacatccaaattatgttcggatcatgtgtatttt 114  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3366216 tattgaaatgagagatattctagttactatttatgtataagcatatttcagattatataatcggaacacatccaaattatgttcggatcatgtgtatttt 3366315  T
Q  115 tgtaaaagaaactagggcgcgtgagaaggtaatggagtggaaatagtaattgtcatgcaaaatatatggaataatgaagtggcccaatagcaatccttga 214  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||    
T  3366316 tgtaaaagaaactaaggcgcgtgagaaggtaatggagtggaaatagtaattgccatgcaaaatatatggaataatgaagtggcccaatagcaattcttga 3366415  T
Q  215 gcccacactacaaaatctcatattttcattatgtaatgacgaaattggttaaatata 271  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3366416 gcccacactacaaaatctcatattttcattatgtaatgacgaaattggttaaatata 3366472  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 216 - 268
Target Start/End: Original strand, 3370441 - 3370493
Alignment:
Q  216 cccacactacaaaatctcatattttcattatgtaatgacgaaattggttaaat 268  Q
    ||||||||||||||||| | ||||||||||| ||||| | |||||||||||||    
T  3370441 cccacactacaaaatcttacattttcattatttaatgtcaaaattggttaaat 3370493  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 21 - 69
Target Start/End: Original strand, 1439496 - 1439544
Alignment:
Q  21 aatgagagatattctagttactacttatgtataagcatatttcagatta 69  Q
    ||||||||| |||||  || ||||||||||| |||||||||||||||||    
T  1439496 aatgagagagattctgattgctacttatgtagaagcatatttcagatta 1439544  T

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Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 17 - 91
Target Start/End: Original strand, 21481544 - 21481618
Alignment:
Q  17 ttgaaatgagagatattctagttactacttatgtataagcatatttcagattatataatcggaacacatccaaat 91  Q
    ||||||||||||| ||| |  |||||  ||||||||||||||||||||||||||||| || ||||||||||||||    
T  21481544 ttgaaatgagagagattttgattactgattatgtataagcatatttcagattatatagtccgaacacatccaaat 21481618  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 44 - 102
Target Start/End: Complemental strand, 19680636 - 19680578
Alignment:
Q  44 cttatgtataagcatatttcagattatataatcggaacacatccaaattatgttcggat 102  Q
    |||||||||| |||||||||||||||||||| |  |||| ||||||| | |||||||||    
T  19680636 cttatgtatacgcatatttcagattatataacccaaacatatccaaactgtgttcggat 19680578  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 44 - 90
Target Start/End: Original strand, 18515338 - 18515384
Alignment:
Q  44 cttatgtataagcatatttcagattatataatcggaacacatccaaa 90  Q
    |||||||||||||| |||||||||||||||||| |||||||||||||    
T  18515338 cttatgtataagcacatttcagattatataatccgaacacatccaaa 18515384  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 44 - 90
Target Start/End: Complemental strand, 9439258 - 9439212
Alignment:
Q  44 cttatgtataagcatatttcagattatataatcggaacacatccaaa 90  Q
    ||||||||||| |||||||| |||||||||||| ||||| |||||||    
T  9439258 cttatgtataaacatatttcggattatataatctgaacatatccaaa 9439212  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 76
Target Start/End: Original strand, 35140575 - 35140633
Alignment:
Q  18 tgaaatgagagatattctagttactacttatgtataagcatatttcagattatataatc 76  Q
    ||||||| || | |||||| || |||||||| ||||||||||||||||||| |||||||    
T  35140575 tgaaatgtgatagattctaatttctacttatatataagcatatttcagattctataatc 35140633  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 45 - 102
Target Start/End: Original strand, 33331661 - 33331718
Alignment:
Q  45 ttatgtataagcatatttcagattatataatcggaacacatccaaattatgttcggat 102  Q
    |||| ||||||||||||| ||||| |||||||  ||||||||| || |||||||||||    
T  33331661 ttatatataagcatatttgagattctataatccaaacacatccgaactatgttcggat 33331718  T

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Target: chr2 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 44 - 98
Target Start/End: Original strand, 2765054 - 2765108
Alignment:
Q  44 cttatgtataagcatatttcagattatataatcggaacacatccaaattatgttc 98  Q
    ||||| |||||||||||||| |||||||||||| ||||||||||||| |||||||    
T  2765054 cttatatataagcatatttcggattatataatcagaacacatccaaactatgttc 2765108  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 45 - 90
Target Start/End: Original strand, 42479284 - 42479329
Alignment:
Q  45 ttatgtataagcatatttcagattatataatcggaacacatccaaa 90  Q
    |||| ||||||||||||||| ||||||||||| |||||||||||||    
T  42479284 ttatatataagcatatttcacattatataatccgaacacatccaaa 42479329  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 45 - 100
Target Start/End: Original strand, 33834306 - 33834361
Alignment:
Q  45 ttatgtataagcatatttcagattatataatcggaacacatccaaattatgttcgg 100  Q
    |||| ||||| ||||||| ||||||||||||| ||||||||||||| | |||||||    
T  33834306 ttatatataaccatattttagattatataatccgaacacatccaaactgtgttcgg 33834361  T

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Target: chr1 (Bit Score: 37; Significance: 0.000000000007; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 44 - 92
Target Start/End: Complemental strand, 6099535 - 6099487
Alignment:
Q  44 cttatgtataagcatatttcagattatataatcggaacacatccaaatt 92  Q
    ||||| ||||||||||||||||||||||||||| |||| ||||||||||    
T  6099535 cttatatataagcatatttcagattatataatctgaactcatccaaatt 6099487  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 44 - 90
Target Start/End: Original strand, 42929465 - 42929511
Alignment:
Q  44 cttatgtataagcatatttcagattatataatcggaacacatccaaa 90  Q
    |||||||||||||||||||| |||| ||||||| |||||||||||||    
T  42929465 cttatgtataagcatatttcggattctataatccgaacacatccaaa 42929511  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 44 - 99
Target Start/End: Complemental strand, 55774398 - 55774343
Alignment:
Q  44 cttatgtataagcatatttcagattatataatcggaacacatccaaattatgttcg 99  Q
    ||||| ||||||||||||| ||||||||||| |  |||||||||||||||||||||    
T  55774398 cttatatataagcatattttagattatataaaccaaacacatccaaattatgttcg 55774343  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 44 - 99
Target Start/End: Complemental strand, 55838607 - 55838552
Alignment:
Q  44 cttatgtataagcatatttcagattatataatcggaacacatccaaattatgttcg 99  Q
    ||||| ||||||||||||| ||||||||||| |  |||||||||||||||||||||    
T  55838607 cttatatataagcatattttagattatataaaccaaacacatccaaattatgttcg 55838552  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 45 - 102
Target Start/End: Original strand, 13509662 - 13509719
Alignment:
Q  45 ttatgtataagcatatttcagattatataatcggaacacatccaaattatgttcggat 102  Q
    |||| ||||||||||||||||| ||||||||| ||||| ||||||| | |||||||||    
T  13509662 ttatatataagcatatttcagaatatataatccgaacatatccaaactgtgttcggat 13509719  T

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Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 50 - 102
Target Start/End: Complemental strand, 29514985 - 29514933
Alignment:
Q  50 tataagcatatttcagattatataatcggaacacatccaaattatgttcggat 102  Q
    ||||| |||||||  |||||||||||| ||||||||||||||| |||||||||    
T  29514985 tataaacatattttggattatataatccgaacacatccaaattgtgttcggat 29514933  T

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Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 44 - 92
Target Start/End: Complemental strand, 48629151 - 48629103
Alignment:
Q  44 cttatgtataagcatatttcagattatataatcggaacacatccaaatt 92  Q
    ||||| |||||||||||||| |||||||||||| |||||||| ||||||    
T  48629151 cttatatataagcatatttcggattatataatccgaacacattcaaatt 48629103  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 45 - 102
Target Start/End: Complemental strand, 28218815 - 28218758
Alignment:
Q  45 ttatgtataagcatatttcagattatataatcggaacacatccaaattatgttcggat 102  Q
    |||| |||||||||||||  |||||||||||| ||||||||||||||| || ||||||    
T  28218815 ttatatataagcatattttggattatataatccgaacacatccaaattgtgctcggat 28218758  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 17 - 86
Target Start/End: Original strand, 39096113 - 39096182
Alignment:
Q  17 ttgaaatgagagatattctagttactacttatgtataagcatatttcagattatataatcggaacacatc 86  Q
    ||||||||||||| |||||  || ||||| |||||||||  | ||||||||||||||||| |||||||||    
T  39096113 ttgaaatgagagagattctgattgctactcatgtataagtgtgtttcagattatataatctgaacacatc 39096182  T

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Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 18 - 102
Target Start/End: Original strand, 41877034 - 41877116
Alignment:
Q  18 tgaaatgagagatattctagttactacttatgtataagcatatttcagattatataatcggaacacatccaaattatgttcggat 102  Q
    |||||||||||| |||||  || | ||||||  |||||||||||||| ||||||||||| ||| ||||||||||| |||| ||||    
T  41877034 tgaaatgagagagattctgattgcgacttat--ataagcatatttcaaattatataatccgaatacatccaaattgtgttgggat 41877116  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 76
Target Start/End: Complemental strand, 5049351 - 5049293
Alignment:
Q  18 tgaaatgagagatattctagttactacttatgtataagcatatttcagattatataatc 76  Q
    |||||||||||| |||||  ||  | |||||||||||||||||||| ||||||||||||    
T  5049351 tgaaatgagagaaattcttattgtttcttatgtataagcatatttcggattatataatc 5049293  T

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Target: scaffold0564 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0564
Description:

Target: scaffold0564; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 44 - 90
Target Start/End: Original strand, 4966 - 5012
Alignment:
Q  44 cttatgtataagcatatttcagattatataatcggaacacatccaaa 90  Q
    ||||||| |||| |||||||||||||||||||  |||||||||||||    
T  4966 cttatgtttaagtatatttcagattatataattcgaacacatccaaa 5012  T

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