View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1511_low_119 (Length: 286)

Name: NF1511_low_119
Description: NF1511
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1511_low_119
NF1511_low_119
[»] chr6 (2 HSPs)
chr6 (155-270)||(32679640-32679755)
chr6 (181-228)||(32679630-32679676)
[»] chr3 (3 HSPs)
chr3 (110-189)||(2230576-2230655)
chr3 (18-86)||(2230704-2230772)
chr3 (192-270)||(2230532-2230609)
[»] chr8 (2 HSPs)
chr8 (18-108)||(44806913-44807003)
chr8 (123-190)||(44806806-44806873)
[»] chr2 (3 HSPs)
chr2 (217-270)||(28136025-28136078)
chr2 (18-108)||(28135839-28135930)
chr2 (110-190)||(28135955-28136035)


Alignment Details
Target: chr6 (Bit Score: 108; Significance: 3e-54; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 155 - 270
Target Start/End: Original strand, 32679640 - 32679755
Alignment:
Q  155 aggtttagaagtcaggtacaaccataaaggatgaaaaggtttagaagtcaggtacaacccacaaaggatgaaaaccaacaatacttgtttgttatctcaa 254  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||    
T  32679640 aggtttagaagtcaggtacaaccataaaggatgaaaaggtttagaagtcaggtacaacccataaaggatgaaaaccaacaatacttgtttgttatcttaa 32679739  T
Q  255 atatcatgtaaaacac 270  Q
    ||||||||||||||||    
T  32679740 atatcatgtaaaacac 32679755  T

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Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 181 - 228
Target Start/End: Original strand, 32679630 - 32679676
Alignment:
Q  181 aaggatgaaaaggtttagaagtcaggtacaacccacaaaggatgaaaa 228  Q
    ||||||||||||||||||||||||||||||| ||| ||||||||||||    
T  32679630 aaggatgaaaaggtttagaagtcaggtacaa-ccataaaggatgaaaa 32679676  T

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Target: chr3 (Bit Score: 52; Significance: 7e-21; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 110 - 189
Target Start/End: Complemental strand, 2230655 - 2230576
Alignment:
Q  110 gaataataatatgtggatatgaaaaaacttaaggcctccggtgataggtttagaagtcaggtacaaccataaaggatgaa 189  Q
    |||||||||||| ||||||| ||||||||||||||||| |||||| |||||||||| ||||||||| || ||||||||||    
T  2230655 gaataataatatatggatataaaaaaacttaaggcctctggtgattggtttagaagccaggtacaatcaaaaaggatgaa 2230576  T

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Target: chr3; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 18 - 86
Target Start/End: Complemental strand, 2230772 - 2230704
Alignment:
Q  18 ggcataggataatgaatcattcagctcgcccaagtaataaaagacctaagattaaggagcaaaacaaaa 86  Q
    ||||||||||| ||| |||||||||||||||||||||| ||||||||||||| ||||||| ||| ||||    
T  2230772 ggcataggatagtgagtcattcagctcgcccaagtaattaaagacctaagataaaggagcgaaaaaaaa 2230704  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 192 - 270
Target Start/End: Complemental strand, 2230609 - 2230532
Alignment:
Q  192 ggtttagaagtcaggtacaacccacaaaggatgaaaaccaacaatacttgtttgttatctcaaatatcatgtaaaacac 270  Q
    |||||||||| ||||||||| | | ||||||||||  || | |||| || |||| ||||||||||||||||||||||||    
T  2230609 ggtttagaagccaggtacaatcaa-aaaggatgaaggccgaaaatatttatttgctatctcaaatatcatgtaaaacac 2230532  T

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Target: chr8 (Bit Score: 51; Significance: 3e-20; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 18 - 108
Target Start/End: Complemental strand, 44807003 - 44806913
Alignment:
Q  18 ggcataggataatgaatcattcagctcgcccaagtaataaaagacctaagattaaggagcaaaacaaaatcagatgccaaaacacaaacca 108  Q
    ||||||||||| ||| ||||||| |||||||||||||||||||||||||||| ||||||| ||  |||||||||| | |||| ||||||||    
T  44807003 ggcataggatagtgagtcattcaactcgcccaagtaataaaagacctaagataaaggagcgaagaaaaatcagatactaaaatacaaacca 44806913  T

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Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 123 - 190
Target Start/End: Complemental strand, 44806873 - 44806806
Alignment:
Q  123 tggatatgaaaaaacttaaggcctccggtgataggtttagaagtcaggtacaaccataaaggatgaaa 190  Q
    |||||||||||||||||||| |||| |||||| |||||||||| | ||||||| || |||| ||||||    
T  44806873 tggatatgaaaaaacttaagtcctctggtgattggtttagaagccgggtacaatcaaaaagaatgaaa 44806806  T

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Target: chr2 (Bit Score: 46; Significance: 3e-17; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 217 - 270
Target Start/End: Original strand, 28136025 - 28136078
Alignment:
Q  217 aaaggatgaaaaccaacaatacttgtttgttatctcaaatatcatgtaaaacac 270  Q
    ||||||||||| |||||||||||| |||||||||||||||||||||||||||||    
T  28136025 aaaggatgaaagccaacaatacttatttgttatctcaaatatcatgtaaaacac 28136078  T

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Target: chr2; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 18 - 108
Target Start/End: Original strand, 28135839 - 28135930
Alignment:
Q  18 ggcataggataatgaatcattcagctcgcccaagtaataaaagacctaagattaaggagcaaaacaaaatcagat-gccaaaacacaaacca 108  Q
    ||||||||||| ||| ||||||||||| |||||||||||||| ||||||||| ||||||| ||| ||||| |||| |  |||||||||||||    
T  28135839 ggcataggatagtgagtcattcagctcacccaagtaataaaatacctaagataaaggagcgaaaaaaaattagatagtaaaaacacaaacca 28135930  T

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Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 110 - 190
Target Start/End: Original strand, 28135955 - 28136035
Alignment:
Q  110 gaataataatatgtggatatgaaaaaacttaaggcctccggtgataggtttagaagtcaggtacaaccataaaggatgaaa 190  Q
    ||||||||||||  |||||||||||||| ||||| ||| |||||| |||||||||| | |||||||  | |||||||||||    
T  28135955 gaataataatatagggatatgaaaaaacataaggactctggtgattggtttagaagccgggtacaataaaaaaggatgaaa 28136035  T

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