View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1511_low_12 (Length: 634)

Name: NF1511_low_12
Description: NF1511
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1511_low_12
NF1511_low_12
[»] chr6 (9 HSPs)
chr6 (12-618)||(33575537-33576143)
chr6 (54-128)||(33568841-33568915)
chr6 (186-346)||(5978666-5978826)
chr6 (78-140)||(19746857-19746919)
chr6 (264-333)||(33568636-33568705)
chr6 (10-126)||(34861966-34862082)
chr6 (371-421)||(5978591-5978641)
chr6 (442-493)||(33568470-33568521)
chr6 (248-294)||(19747033-19747079)
[»] chr3 (5 HSPs)
chr3 (10-340)||(36339760-36340090)
chr3 (465-508)||(36339586-36339629)
chr3 (369-421)||(36339679-36339731)
chr3 (65-141)||(25901429-25901505)
chr3 (65-141)||(25915447-25915523)
[»] scaffold0707 (3 HSPs)
scaffold0707 (54-128)||(5235-5309)
scaffold0707 (264-333)||(5030-5099)
scaffold0707 (442-493)||(4864-4915)
[»] chr1 (2 HSPs)
chr1 (270-320)||(17954036-17954086)
chr1 (261-308)||(39379422-39379469)
[»] chr7 (8 HSPs)
chr7 (91-140)||(26237459-26237508)
chr7 (459-493)||(22020920-22020954)
chr7 (270-320)||(24035416-24035466)
chr7 (251-309)||(26237278-26237336)
chr7 (91-128)||(24016646-24016683)
chr7 (264-309)||(26229881-26229926)
chr7 (91-140)||(26256620-26256669)
chr7 (264-308)||(24391079-24391123)
[»] chr2 (1 HSPs)
chr2 (90-138)||(25376921-25376969)
[»] chr4 (3 HSPs)
chr4 (452-493)||(2910546-2910587)
chr4 (260-308)||(3557388-3557436)
chr4 (65-141)||(10571426-10571502)


Alignment Details
Target: chr6 (Bit Score: 507; Significance: 0; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 507; E-Value: 0
Query Start/End: Original strand, 12 - 618
Target Start/End: Complemental strand, 33576143 - 33575537
Alignment:
Q  12 caaaggcagtccatcagaactcgaactgatggcttatcataaggcagctccttaaaacccttaggaagcaaaaattgtgtgtatgtctctgtcgaaagat 111  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||    
T  33576143 caaaggcagtccatcagaactcgaactgatggcttatcataaggcagctccttaaaacccgtaggaagcaaaaattgtgtgtatgtctctgtcaaaagat 33576044  T
Q  112 caagcgaaacaatcacacatttctcaacaggaccaataagagttttaaatgttcctccaacctcaattggtgcgtagtcactgtgaatagctaaccagtt 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33576043 caagcgaaacaatcacacatttctcaacaggaccaataagagttttaaatgttcctccaacctcaattggtgcgtagtcactgtgaatagctaaccagtt 33575944  T
Q  212 aatagttccactacaatatacaccatcatttcccaaaataggaacgaaagggaaactttgaatatttctccaacaattatcacccaaattgaaaacttaa 311  Q
    ||||||||||||| |||  ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||| |    
T  33575943 aatagttccactaaaatgaacaccatcatttcccaaaataggaacgaaagggaaacttcgaatatttctccaacaattatcacccgaattgaaaacttta 33575844  T
Q  312 accttgcttctccataaacctttgttctcgatctcnnnnnnnnnnnnnnnncctatttgaagtgccactaccttgtaagttccagttaaataatcataac 411  Q
    ||||||||||||||||||| |||||||||||||||                ||||| |||||||||||||||||||||||||| |||||||||||| |||    
T  33575843 accttgcttctccataaacttttgttctcgatctctttttctttatttttacctatatgaagtgccactaccttgtaagttccggttaaataatcacaac 33575744  T
Q  412 caacactgaatacaaaagtgctatccctatagtcacgaagaaacccaaatttatcagatattgtccttgttgcagggttccaaacatagaaccagtactt 511  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33575743 caacactgaatacaaaagtgctatccctatagtcacgaagaaacccaaatttatcagatattgtccttgttgcagggttccaaacatagaaccagtactt 33575644  T
Q  512 aatgtgtgtcactaagcgtggcctagaaagtaaaaatatcaatccgttgcaagaaccaacaaccagaggaaattcacttattatgggacagcggaagtgg 611  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33575643 aatgtgtgtcactaagcgtggcctagaaagtaaaaatatcaatccgttgtaagaaccaacaaccagaggaaattcacttattatgggacagcggaagtgg 33575544  T
Q  612 ttaaagg 618  Q
    |||||||    
T  33575543 ttaaagg 33575537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 54 - 128
Target Start/End: Complemental strand, 33568915 - 33568841
Alignment:
Q  54 ggcagctccttaaaacccttaggaagcaaaaattgtgtgtatgtctctgtcgaaagatcaagcgaaacaatcaca 128  Q
    |||| ||| |||||||||||||||||||||||||||||||||||||| | |||||||||||| ||||||||||||    
T  33568915 ggcacctcattaaaacccttaggaagcaaaaattgtgtgtatgtctccggcgaaagatcaagggaaacaatcaca 33568841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 186 - 346
Target Start/End: Complemental strand, 5978826 - 5978666
Alignment:
Q  186 tagtcactgtgaatagctaaccagttaatagttccactacaatatacaccatcatttcccaaaataggaacgaaagggaaactttgaatatttctccaac 285  Q
    ||||||| ||||||||||| ||| ||||  ||||||||  |||  ||||||||||| || | || |||||| ||||| ||||||||||| | ||||||||    
T  5978826 tagtcaccgtgaatagctagccaattaaccgttccactcaaatgcacaccatcattcccgataagaggaaccaaaggaaaactttgaatctctctccaac 5978727  T
Q  286 aattatcacccaaattgaaaacttaaaccttgcttctccataaacctttgttctcgatctc 346  Q
    ||  |||||||||| |||||||    |||||||||||||||||||||| | ||||| ||||    
T  5978726 aaaaatcacccaaactgaaaaccctcaccttgcttctccataaaccttcggtctcggtctc 5978666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 78 - 140
Target Start/End: Original strand, 19746857 - 19746919
Alignment:
Q  78 agcaaaaattgtgtgtatgtctctgtcgaaagatcaagcgaaacaatcacacatttctcaaca 140  Q
    ||||||||||||||||||||||| |||||||||||||| |||||||||||| ||| |||||||    
T  19746857 agcaaaaattgtgtgtatgtctcagtcgaaagatcaagggaaacaatcacaaattgctcaaca 19746919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 264 - 333
Target Start/End: Complemental strand, 33568705 - 33568636
Alignment:
Q  264 aaactttgaatatttctccaacaattatcacccaaattgaaaacttaaaccttgcttctccataaacctt 333  Q
    |||||||||||||||||||||||| ||||||||||| ||||||||   ||||   |||||||||||||||    
T  33568705 aaactttgaatatttctccaacaactatcacccaaactgaaaactcgcacctcatttctccataaacctt 33568636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 10 - 126
Target Start/End: Original strand, 34861966 - 34862082
Alignment:
Q  10 agcaaaggcagtccatcagaactcgaactgatggcttatcataaggcagctccttaaaacccttaggaagcaaaaattgtgtgtatgtctctgtcgaaag 109  Q
    |||||||||| |||| |||||| ||||   |||||| | || | |||| ||| ||||||||||| |||||||| || | | |||||||||| || |||||    
T  34861966 agcaaaggcaatccaacagaacccgaagatatggctcagcacatggcaactctttaaaacccttgggaagcaacaaatatttgtatgtctcggtggaaag 34862065  T
Q  110 atcaagcgaaacaatca 126  Q
    |||||||||| ||||||    
T  34862066 atcaagcgaagcaatca 34862082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 371 - 421
Target Start/End: Complemental strand, 5978641 - 5978591
Alignment:
Q  371 aagtgccactaccttgtaagttccagttaaataatcataaccaacactgaa 421  Q
    |||||||||||||||||| |||||||||||||||||| |||| | ||||||    
T  5978641 aagtgccactaccttgtatgttccagttaaataatcacaaccgaaactgaa 5978591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 442 - 493
Target Start/End: Complemental strand, 33568521 - 33568470
Alignment:
Q  442 agtcacgaagaaacccaaatttatcagatattgtccttgttgcagggttcca 493  Q
    ||||||||| |||||| || || ||||||||||||| |||||||||||||||    
T  33568521 agtcacgaaaaaaccctaaattttcagatattgtccctgttgcagggttcca 33568470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 248 - 294
Target Start/End: Original strand, 19747033 - 19747079
Alignment:
Q  248 aataggaacgaaagggaaactttgaatatttctccaacaattatcac 294  Q
    ||||||||  ||||||||||| | |||||||||||||||||||||||    
T  19747033 aataggaatcaaagggaaactctcaatatttctccaacaattatcac 19747079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 87; Significance: 2e-41; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 10 - 340
Target Start/End: Complemental strand, 36340090 - 36339760
Alignment:
Q  10 agcaaaggcagtccatcagaactcgaactgatggcttatcataaggcagctccttaaaacccttaggaagcaaaaattgtgtgtatgtctctgtcgaaag 109  Q
    |||||||||||||||||||||| ||||  ||||||| | |  | |||| ||||||||||||   |||||||||||| ||  |||||||||| ||||||||    
T  36340090 agcaaaggcagtccatcagaacccgaagagatggctcaacgcatggcacctccttaaaacctgcaggaagcaaaaactgcctgtatgtctccgtcgaaag 36339991  T
Q  110 atcaagcgaaacaatcacacatttctcaacaggaccaataagagttttaaatgttcctccaacctcaattggtgcgtagtcactgtgaatagctaaccag 209  Q
    ||||||||||||||||||  ||| ||||||| ||  ||||  || ||||  |||| |||||   ||||||| | || |||| |    || ||| ||||||    
T  36339990 atcaagcgaaacaatcaccaattgctcaacaagaggaatataagctttacttgtttctccacaatcaattgatacgaagtcgccagaaagagccaaccag 36339891  T
Q  210 ttaatagttccactacaatatacaccatcatttcccaaaataggaacgaaagggaaactttgaatatttctccaacaattatcacccaaattgaaaactt 309  Q
    ||||||| ||||||  |||  ||||||||||| |  | || |||||| ||||||||||||||||||| |||||||||||||||||| ||| | ||||||     
T  36339890 ttaatagctccactcaaatgcacaccatcattccatataagaggaaccaaagggaaactttgaatatatctccaacaattatcaccaaaactaaaaactg 36339791  T
Q  310 aaaccttgcttctccataaacctttgttctc 340  Q
      ||||||||||||||||||| || ||||||    
T  36339790 ccaccttgcttctccataaactttcgttctc 36339760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 465 - 508
Target Start/End: Complemental strand, 36339629 - 36339586
Alignment:
Q  465 tcagatattgtccttgttgcagggttccaaacatagaaccagta 508  Q
    ||||||||||||||||||||||||||||||| | ||||||||||    
T  36339629 tcagatattgtccttgttgcagggttccaaaaacagaaccagta 36339586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 369 - 421
Target Start/End: Complemental strand, 36339731 - 36339679
Alignment:
Q  369 tgaagtgccactaccttgtaagttccagttaaataatcataaccaacactgaa 421  Q
    ||||| |||||||||||||||||||||||||||  |||| |||||| ||||||    
T  36339731 tgaagcgccactaccttgtaagttccagttaaacgatcacaaccaaaactgaa 36339679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 65 - 141
Target Start/End: Original strand, 25901429 - 25901505
Alignment:
Q  65 aaaacccttaggaagcaaaaattgtgtgtatgtctctgtcgaaagatcaagcgaaacaatcacacatttctcaacag 141  Q
    |||||||  ||| ||||| || || ||||||| ||| || || ||||||||||||||||||||| ||| ||||||||    
T  25901429 aaaaccccgaggtagcaacaactgagtgtatgactcagtggacagatcaagcgaaacaatcacatattgctcaacag 25901505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 65 - 141
Target Start/End: Original strand, 25915447 - 25915523
Alignment:
Q  65 aaaacccttaggaagcaaaaattgtgtgtatgtctctgtcgaaagatcaagcgaaacaatcacacatttctcaacag 141  Q
    |||||||  ||| ||||| || || ||||||| ||| || || ||||||||||||||||||||| ||| ||||||||    
T  25915447 aaaaccccgaggcagcaacaactgagtgtatgactcagtggacagatcaagcgaaacaatcacatattgctcaacag 25915523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0707 (Bit Score: 55; Significance: 3e-22; HSPs: 3)
Name: scaffold0707
Description:

Target: scaffold0707; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 54 - 128
Target Start/End: Complemental strand, 5309 - 5235
Alignment:
Q  54 ggcagctccttaaaacccttaggaagcaaaaattgtgtgtatgtctctgtcgaaagatcaagcgaaacaatcaca 128  Q
    |||| ||| |||||||||||||||||||||||||||||||||||||| | |||||||||||| ||||||||||||    
T  5309 ggcacctcattaaaacccttaggaagcaaaaattgtgtgtatgtctccggcgaaagatcaagggaaacaatcaca 5235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0707; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 264 - 333
Target Start/End: Complemental strand, 5099 - 5030
Alignment:
Q  264 aaactttgaatatttctccaacaattatcacccaaattgaaaacttaaaccttgcttctccataaacctt 333  Q
    |||||||||||||||||||||||| ||||||||||| ||||||||   ||||   |||||||||||||||    
T  5099 aaactttgaatatttctccaacaactatcacccaaactgaaaactcgcacctcatttctccataaacctt 5030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0707; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 442 - 493
Target Start/End: Complemental strand, 4915 - 4864
Alignment:
Q  442 agtcacgaagaaacccaaatttatcagatattgtccttgttgcagggttcca 493  Q
    ||||||||| |||||| || || ||||||||||||| |||||||||||||||    
T  4915 agtcacgaaaaaaccctaaattttcagatattgtccctgttgcagggttcca 4864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 270 - 320
Target Start/End: Original strand, 17954036 - 17954086
Alignment:
Q  270 tgaatatttctccaacaattatcacccaaattgaaaacttaaaccttgctt 320  Q
    |||||||||||||||||||||||||||||| || |||||| ||||| ||||    
T  17954036 tgaatatttctccaacaattatcacccaaactgtaaactttaacctcgctt 17954086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 261 - 308
Target Start/End: Original strand, 39379422 - 39379469
Alignment:
Q  261 gggaaactttgaatatttctccaacaattatcacccaaattgaaaact 308  Q
    |||||||||| |||||||||||||  ||||||||||||| ||||||||    
T  39379422 gggaaactttcaatatttctccaaacattatcacccaaactgaaaact 39379469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000009; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 91 - 140
Target Start/End: Complemental strand, 26237508 - 26237459
Alignment:
Q  91 tgtatgtctctgtcgaaagatcaagcgaaacaatcacacatttctcaaca 140  Q
    ||||||||| |||||||||||||||||||| ||||||| ||| |||||||    
T  26237508 tgtatgtctttgtcgaaagatcaagcgaaagaatcacaaattgctcaaca 26237459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 459 - 493
Target Start/End: Complemental strand, 22020954 - 22020920
Alignment:
Q  459 aatttatcagatattgtccttgttgcagggttcca 493  Q
    ||||||||||||||||||||||| |||||||||||    
T  22020954 aatttatcagatattgtccttgtagcagggttcca 22020920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 270 - 320
Target Start/End: Complemental strand, 24035466 - 24035416
Alignment:
Q  270 tgaatatttctccaacaattatcacccaaattgaaaacttaaaccttgctt 320  Q
    |||||||||||||||||||||||||| | |||||||| || |||| |||||    
T  24035466 tgaatatttctccaacaattatcaccaagattgaaaattttaaccctgctt 24035416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 251 - 309
Target Start/End: Complemental strand, 26237336 - 26237278
Alignment:
Q  251 aggaacgaaagggaaactttgaatatttctccaacaattatcacccaaattgaaaactt 309  Q
    ||||||||  || ||||||||||||||||||||||| ||| |||||||| | |||||||    
T  26237336 aggaacgaccggaaaactttgaatatttctccaacagttaacacccaaactaaaaactt 26237278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 91 - 128
Target Start/End: Complemental strand, 24016683 - 24016646
Alignment:
Q  91 tgtatgtctctgtcgaaagatcaagcgaaacaatcaca 128  Q
    |||||||||| |||||||||||||| ||||||||||||    
T  24016683 tgtatgtctccgtcgaaagatcaagagaaacaatcaca 24016646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 264 - 309
Target Start/End: Complemental strand, 26229926 - 26229881
Alignment:
Q  264 aaactttgaatatttctccaacaattatcacccaaattgaaaactt 309  Q
    ||||||||||||||||||||||| ||| |||||||| | |||||||    
T  26229926 aaactttgaatatttctccaacagttaccacccaaactaaaaactt 26229881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 91 - 140
Target Start/End: Complemental strand, 26256669 - 26256620
Alignment:
Q  91 tgtatgtctctgtcgaaagatcaagcgaaacaatcacacatttctcaaca 140  Q
    |||||||||| || |||||||||||||||| ||||||| ||| |||||||    
T  26256669 tgtatgtctccgttgaaagatcaagcgaaataatcacaaattgctcaaca 26256620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 264 - 308
Target Start/End: Complemental strand, 24391123 - 24391079
Alignment:
Q  264 aaactttgaatatttctccaacaattatcacccaaattgaaaact 308  Q
    |||||||||||||||||||||  ||||||||||||| | ||||||    
T  24391123 aaactttgaatatttctccaaatattatcacccaaactaaaaact 24391079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 90 - 138
Target Start/End: Complemental strand, 25376969 - 25376921
Alignment:
Q  90 gtgtatgtctctgtcgaaagatcaagcgaaacaatcacacatttctcaa 138  Q
    ||||||||||| ||||| ||||| ||||||||||||||| |||||||||    
T  25376969 gtgtatgtctcagtcgagagatcgagcgaaacaatcacatatttctcaa 25376921  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 452 - 493
Target Start/End: Complemental strand, 2910587 - 2910546
Alignment:
Q  452 aaacccaaatttatcagatattgtccttgttgcagggttcca 493  Q
    |||||| ||||||| ||||||||||||||| |||||||||||    
T  2910587 aaaccctaatttattagatattgtccttgtggcagggttcca 2910546  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 260 - 308
Target Start/End: Complemental strand, 3557436 - 3557388
Alignment:
Q  260 agggaaactttgaatatttctccaacaattatcacccaaattgaaaact 308  Q
    ||||||||||| |||||||||||||  ||||||||| ||| ||||||||    
T  3557436 agggaaactttcaatatttctccaaacattatcacctaaactgaaaact 3557388  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 65 - 141
Target Start/End: Original strand, 10571426 - 10571502
Alignment:
Q  65 aaaacccttaggaagcaaaaattgtgtgtatgtctctgtcgaaagatcaagcgaaacaatcacacatttctcaacag 141  Q
    |||||||  ||||||||| ||||  ||||||| ||| || || |||||||| |||||||||||| ||| ||||||||    
T  10571426 aaaaccccgaggaagcaacaattcagtgtatgactcagttgagagatcaagtgaaacaatcacatattgctcaacag 10571502  T

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