View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1511_low_122 (Length: 283)
Name: NF1511_low_122
Description: NF1511
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1511_low_122 |
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Alignment Details
Target: chr2 (Bit Score: 259; Significance: 1e-144; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 1 - 267
Target Start/End: Complemental strand, 4314760 - 4314494
Alignment:
| Q |
1 |
gcttcatctagatttgaaggaaaaactggctggaaagaagttcttaattgttttggatgatgtttggaccgaggattatgacgcttggaattcactttta |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4314760 |
gcttcatctagatttgaaggaaaaactggctggaaagaagttcttaattgttttggatgatgtttggaccgaggattatgacgcttggaattcactttta |
4314661 |
T |
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| Q |
101 |
agacctcttcatgatggcaccaggggaagtaaaattcttgtaacaacccgaagtaaaaaagttgcttctatggtacaaacttttcaaggttactctcttg |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
4314660 |
agacctcttcatgatggcaccaggggaagtaaaattcttgtaacaacccgaagtaaaaaagttgcttgtatggtacaaacttttcaaggttactctcttg |
4314561 |
T |
|
| Q |
201 |
agcaattgtctgatgaagattgttggtcagtgtttggaagtcatgcatgcctttctccaaaagaata |
267 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
4314560 |
agcaattgtctgatgaagattgttggtcagtgtttggaaatcatgcatgcctttctccaaaagaata |
4314494 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 166; E-Value: 7e-89
Query Start/End: Original strand, 1 - 262
Target Start/End: Complemental strand, 4305898 - 4305637
Alignment:
| Q |
1 |
gcttcatctagatttgaaggaaaaactggctggaaagaagttcttaattgttttggatgatgtttggaccgaggattatgacgcttggaattcactttta |
100 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| ||||||||||| |||||||| || |||||| |
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| T |
4305898 |
gcttcatctagatttgaaggaaaaactggccggaaagaagttcttaattgttttggatgacgtttggactgaggattatgatgcttggaaatccctttta |
4305799 |
T |
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| Q |
101 |
agacctcttcatgatggcaccaggggaagtaaaattcttgtaacaacccgaagtaaaaaagttgcttctatggtacaaacttttcaaggttactctcttg |
200 |
Q |
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| T |
4305798 |
aggcctcttcagtacagtgacaaaggaagtaaaattcttgtaacaacccgtattaaaaaagttgcttctatgctacaaacttttcaaggttactctcttg |
4305699 |
T |
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| Q |
201 |
agcaattgtctgatgaagattgttggtcagtgtttggaagtcatgcatgcctttctccaaaa |
262 |
Q |
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|||||||||||||||||||||||||||| ||||||| || |||||||||||||||| |||| |
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| T |
4305698 |
agcaattgtctgatgaagattgttggtctgtgtttgaaaaccatgcatgcctttctctaaaa |
4305637 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 1 - 265
Target Start/End: Original strand, 4253725 - 4253990
Alignment:
| Q |
1 |
gcttcatctagatttgaaggaaaaactggctggaaagaagttcttaattgttttggatgatgtttggaccgaggattatgacgcttggaattcactttta |
100 |
Q |
| |
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|||||||| |||||||||||||||||| ||||||| |||||||||||||||||||||||||| |||||||||||||||||| |||||||| |||||| |
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| T |
4253725 |
gcttcatcgtgatttgaaggaaaaactgactggaaaaaagttcttaattgttttggatgatgtatggaccgaggattatgacagctggaattctctttta |
4253824 |
T |
|
| Q |
101 |
agacctcttcatgatggcaccaggggaagtaaaattcttgtaacaacccgaagtaaaaaagttgcttctatggtacaaacttttcaaggtt-actctctt |
199 |
Q |
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|| |||||||| | || | | ||||| |||||||||||||||||| || | | ||||||||||||||||||| |||||||||||||||| | |||||| |
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| T |
4253825 |
aggcctcttcaatacggggctaagggaaataaaattcttgtaacaactcgtattgaaaaagttgcttctatggtccaaacttttcaaggttaattctctt |
4253924 |
T |
|
| Q |
200 |
gagcaattgtctgatgaagattgttggtcagtgtttggaagtcatgcatgcctttctccaaaagaa |
265 |
Q |
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|| |||| |||||||||||||||||||| ||||||| || |||||||||||||||||| ||||| |
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| T |
4253925 |
gatgaattatctgatgaagattgttggtcggtgtttgcaaaccatgcatgcctttctccagaagaa |
4253990 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 11 - 255
Target Start/End: Original strand, 4246617 - 4246861
Alignment:
| Q |
11 |
gatttgaaggaaaaactggctggaaagaagttcttaattgttttggatgatgtttggaccgaggattatgacgcttggaattcacttttaagacctcttc |
110 |
Q |
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|||||||||||||||||| ||||||| |||||||| ||||||||||| |||||||||| | |||||||| || ||||||||| ||| | | ||||||| |
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| T |
4246617 |
gatttgaaggaaaaactgactggaaaaaagttcttgattgttttggacgatgtttggatcaaggattataacagttggaattctcttatgatgcctcttc |
4246716 |
T |
|
| Q |
111 |
atgatggcaccaggggaagtaaaattcttgtaacaacccgaagtaaaaaagttgcttctatggtacaaacttttcaaggttactctcttgagcaattgtc |
210 |
Q |
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| | || | | |||||| ||||||||||||||||| || ||| | ||||||||||||||||| ||||||||||||||||| ||||||||| ||||||| |
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| T |
4246717 |
aatacggagctaagggaagcaaaattcttgtaacaacgcgtagtgataaagttgcttctatggtccaaacttttcaaggttattctcttgagaaattgtc |
4246816 |
T |
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| Q |
211 |
tgatgaagattgttggtcagtgtttggaagtcatgcatgcctttc |
255 |
Q |
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|||||||||||||||||||||||||| || |||||||||||||| |
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| T |
4246817 |
tgatgaagattgttggtcagtgtttgcaatccatgcatgcctttc |
4246861 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 170; Significance: 3e-91; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 1 - 266
Target Start/End: Original strand, 41933169 - 41933434
Alignment:
| Q |
1 |
gcttcatctagatttgaaggaaaaactggctggaaagaagttcttaattgttttggatgatgtttggaccgaggattatgacgcttggaattcactttta |
100 |
Q |
| |
|
|||||||||||||||||||||||||||| | ||||||||||||||||||||||| |||||| | ||||||||||||||||| ||||||||||| |||||| |
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| T |
41933169 |
gcttcatctagatttgaaggaaaaactgtccggaaagaagttcttaattgttttagatgatttctggaccgaggattatgatgcttggaattctctttta |
41933268 |
T |
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| Q |
101 |
agacctcttcatgatggcaccaggggaagtaaaattcttgtaacaacccgaagtaaaaaagttgcttctatggtacaaacttttcaaggttactctcttg |
200 |
Q |
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|| |||||||| |||| |||| |||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41933269 |
aggcctcttcaatatggtaccaagggaagtaaaattcttgtaacaacccatattaaaaaagttgcttctatggtacaaacttttcaaggttactctcttg |
41933368 |
T |
|
| Q |
201 |
agcaattgtctgatgaagattgttggtcagtgtttggaagtcatgcatgcctttctccaaaagaat |
266 |
Q |
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||||||||||||| |||||||||||||| ||||||| || ||||| || ||| ||||| |||||| |
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| T |
41933369 |
agcaattgtctgaagaagattgttggtccgtgtttgcaaaccatgcctgtcttcctccagaagaat |
41933434 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 81; Significance: 4e-38; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 3 - 259
Target Start/End: Complemental strand, 34802834 - 34802578
Alignment:
| Q |
3 |
ttcatctagatttgaaggaaaaactggctggaaagaagttcttaattgttttggatgatgtttggaccgaggattatgacgcttggaattcacttttaag |
102 |
Q |
| |
|
|||||| |||||||||||| || |||| |||||||||||||||||||| ||||||||||| ||||| |||||||||||| ||||||| ||| |||| |
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| T |
34802834 |
ttcatcaagatttgaaggagaagttggcgggaaagaagttcttaattgtattggatgatgtctggactgaggattatgacagttggaatattcttataag |
34802735 |
T |
|
| Q |
103 |
acctcttcatgatggcaccaggggaagtaaaattcttgtaacaacccgaagtaaaaaagttgcttctatggtacaaacttttcaaggttactctcttgag |
202 |
Q |
| |
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||| |||| || || | |||||||||||||||||||||||| | | | |||| |||||| ||||||| |||||||||||| |||| |||| || |
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| T |
34802734 |
gccttttcaatgcggaactaaaggaagtaaaattcttgtaacaacctgtattgaaaatgttgctactatggtccaaacttttcaaccttaccatcttaag |
34802635 |
T |
|
| Q |
203 |
caattgtctgatgaagattgttggtcagtgtttggaagtcatgcatgcctttctcca |
259 |
Q |
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||||||||||||||||||||||||||| || | || |||||||| ||||||||| |
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| T |
34802634 |
atattgtctgatgaagattgttggtcagttttcgcaaaccatgcatgtctttctcca |
34802578 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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