View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1511_low_125 (Length: 281)
Name: NF1511_low_125
Description: NF1511
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1511_low_125 |
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Alignment Details
Target: chr4 (Bit Score: 227; Significance: 1e-125; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 19 - 253
Target Start/End: Complemental strand, 40115121 - 40114887
Alignment:
| Q |
19 |
ggaccagcccctgttaggtccttagatggtttcttatactatctaatatttgttgatcatttctcaaaatatatttggctttttcctatgaaaaataaat |
118 |
Q |
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| T |
40115121 |
ggaccagcccctgttaggtccttagatggtttcttatactatctaatatttgttgatcatttctcaaaatatatttggctttttcccatgaaaaataaat |
40115022 |
T |
|
| Q |
119 |
ctgatgtctccactatatttcctcaatttaaaaatgttgttgagaaacattttaacttccctattacttccctttactcagataatggaggagaattcat |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
40115021 |
ctgatgtctccactatatttcctcaatttaaaaatgttgttgagaaacattttaacttctctattacttccctttactcagataatggaggagaattcat |
40114922 |
T |
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| Q |
219 |
aaaactaaaatcttatttgtcctccaatggtatat |
253 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
40114921 |
aaaactaaaatcttatttgtcctccaatggtatat |
40114887 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 32 - 128
Target Start/End: Complemental strand, 9006934 - 9006838
Alignment:
| Q |
32 |
ttaggtccttagatggtttcttatactatctaatatttgttgatcatttctcaaaatatatttggctttttcctatgaaaaataaatctgatgtctc |
128 |
Q |
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| T |
9006934 |
ttaggtccttagatggctacttatattacttaatatttgtagatcatttctccaaatatattgggttatatccaatgaaaaataaatctgatgtctc |
9006838 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 72; Significance: 8e-33; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 22 - 253
Target Start/End: Complemental strand, 656252 - 656021
Alignment:
| Q |
22 |
ccagcccctgttaggtccttagatggtttcttatactatctaatatttgttgatcatttctcaaaatatatttggctttttcctatgaaaaataaatctg |
121 |
Q |
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| T |
656252 |
ccagctcctattaggtcattagatggttacttatactatctaatttttgttgatcattttttgaaatatatttggttatatccattgaaaaataaatcag |
656153 |
T |
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| Q |
122 |
atgtctccactatatttcctcaatttaaaaatgttgttgagaaacattttaacttccctattacttccctttactcagataatggaggagaattcataaa |
221 |
Q |
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||||||| | ||| |||||| |||| |||| ||||||| | ||| ||||||| || ||||| | ||| || || || || ||||| || |||| ||| || |
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| T |
656152 |
atgtctctattatttttcctaaattcaaaagtgttgttaaaaaatattttaatttgcctatcatttctctatattctgacaatggtggggaatacatcaa |
656053 |
T |
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| Q |
222 |
actaaaatcttatttgtcctccaatggtatat |
253 |
Q |
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| T |
656052 |
actaaaatcctatctctcctctaatggtatat |
656021 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 32 - 248
Target Start/End: Original strand, 3017524 - 3017740
Alignment:
| Q |
32 |
ttaggtccttagatggtttcttatactatctaatatttgttgatcatttctcaaaatatatttggctttttcctatgaaaaataaatctgatgtctccac |
131 |
Q |
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| T |
3017524 |
ttaggtcgttagatggctacttgtactatctaatctttgttgatcattattcaaaatacaaatggttatatcccatgaaaaacaagtctgatgtctcatc |
3017623 |
T |
|
| Q |
132 |
tatatttcctcaatttaaaaatgttgttgagaaacattttaacttccctattacttccctttactcagataatggaggagaattcataaaactaaaatct |
231 |
Q |
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| T |
3017624 |
actttttcctcaattcaaataacttgttgaaaaatattttaacttaccaattgtttctctatattctgacaatggtggagagtacattaaactaagatct |
3017723 |
T |
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| Q |
232 |
tatttgtcctccaatgg |
248 |
Q |
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| T |
3017724 |
tttttgtcatcaaatgg |
3017740 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 32 - 127
Target Start/End: Complemental strand, 23971296 - 23971201
Alignment:
| Q |
32 |
ttaggtccttagatggtttcttatactatctaatatttgttgatcatttctcaaaatatatttggctttttcctatgaaaaataaatctgatgtct |
127 |
Q |
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||||||| |||||||||||| | || ||| |||| ||| |||||||||| || ||||| |||||||||| ||| |||||| ||| |||||||||| |
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| T |
23971296 |
ttaggtctttagatggtttcgtttattatgtaatttttattgatcatttttccaaatacatttggctttatccaatgaaatttaagtctgatgtct |
23971201 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 32 - 127
Target Start/End: Complemental strand, 18188055 - 18187960
Alignment:
| Q |
32 |
ttaggtccttagatggtttcttatactatctaatatttgttgatcatttctcaaaatatatttggctttttcctatgaaaaataaatctgatgtct |
127 |
Q |
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||||||| |||||||||||| | || ||| |||| ||| ||||||||||||| ||||| |||||||||| ||| |||||| ||| |||||||||| |
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| T |
18188055 |
ttaggtctttagatggtttcgtttattatgtaatttttattgatcatttctccaaatacatttggctttatccaatgaaatttaagtctgatgtct |
18187960 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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