View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1511_low_126 (Length: 281)
Name: NF1511_low_126
Description: NF1511
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1511_low_126 |
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Alignment Details
Target: chr1 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 12 - 265
Target Start/End: Complemental strand, 29392840 - 29392589
Alignment:
| Q |
12 |
aatactacagatatacagttaagtagcaaagatagaaaatcagcaacacgaagaagcatttgtggcttctaatactaacaagcttctatttttcaccaag |
111 |
Q |
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| T |
29392840 |
aatactacagatatacagttaagtagcaaaga--gaaaatcagcaacaagaagaagcatttgtggcttctaatactaacaagcttctatttttcaccaag |
29392743 |
T |
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| Q |
112 |
gccgcatgaagcaaatgtcccagataaatataagctttccagcaatgtatgttgattttaagtttcattatgtcttgtaatttcattgtggacatgtcta |
211 |
Q |
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| T |
29392742 |
gccgcatgaagcaaatgtcccagataaatacaagctttccagcaatgtatgttgagtttaagtttcattttgtcttgtaatttcattgtggacatgcata |
29392643 |
T |
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| Q |
212 |
tttcattcattgtcttgtaagcaatgtatatttcatctaatgcttacaatatat |
265 |
Q |
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| T |
29392642 |
tttcattcattgtcttgtaagcaatgtatatttcatttaatgcttacaatatat |
29392589 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 154 - 218
Target Start/End: Original strand, 25325412 - 25325477
Alignment:
| Q |
154 |
caatgtatgttgattttaagtttca-ttatgtcttgtaatttcattgtggacatgtctatttcatt |
218 |
Q |
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||||||||||||| ||||||||||| || |||||||||||||| || ||||| || ||||||||| |
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| T |
25325412 |
caatgtatgttgagtttaagtttcacttttgtcttgtaatttctttttggactggtatatttcatt |
25325477 |
T |
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