View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1511_low_128 (Length: 280)
Name: NF1511_low_128
Description: NF1511
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1511_low_128 |
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Alignment Details
Target: chr5 (Bit Score: 254; Significance: 1e-141; HSPs: 8)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 7 - 264
Target Start/End: Original strand, 3215917 - 3216174
Alignment:
| Q |
7 |
gtccaatgatacaggccatgctgctagaatgttcactccaggtccaattatgtctggtttcagaattcctgggctttcttggtttggtcctcttgatgaa |
106 |
Q |
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| T |
3215917 |
gtccaatgatacatgccatgctgctagaatgttcactccaggtccaattatgtctggtttcagaattcctgggctttcttggtttggtcctcttgatgaa |
3216016 |
T |
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| Q |
107 |
aagtaagctacttgaggggcattgggatttccaataacagttccattgaataaaatcgtggccattggtgttgaagttgagtttatataatctttgatgg |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3216017 |
aagtaagctacttgaggggcattgggatttccaataacagttccattgaataaaatcgtggccattggtgttgaagttgagtttatataatctttgatgg |
3216116 |
T |
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| Q |
207 |
ataaaccagcagagtaacttacaagtgcagcaggtagattgtcttgaacatcggattt |
264 |
Q |
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| T |
3216117 |
ataaaccagcagagtaacttacaagtgcagcaggtagattgtcttgaacatcggattt |
3216174 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 11 - 244
Target Start/End: Original strand, 3202011 - 3202244
Alignment:
| Q |
11 |
aatgatacaggccatgctgctagaatgttcactccaggtccaattatgtctggtttcagaattcctgggctttcttggtttggtcctcttgatgaaaagt |
110 |
Q |
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||||||| ||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||| |||||| || | |||| |||||||||||||| |
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| T |
3202011 |
aatgatataggccatcctgctagaatgttcaatccaggtccaattatgtctggtttcagaattccagggcttgttttgcttggacctcttgatgaaaatg |
3202110 |
T |
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| Q |
111 |
aagctacttgaggggcattgggatttccaataacagttccattgaataaaatcgtggccattggtgttgaagttgagtttatataatctttgatggataa |
210 |
Q |
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| T |
3202111 |
aagcaacttgaggggaaagtggatttccaataacagttcctttgaataaaattgtggccattggtgttgaagttgagtttatataatctttgatggataa |
3202210 |
T |
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| Q |
211 |
accagcagagtaacttacaagtgcagcaggtaga |
244 |
Q |
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| T |
3202211 |
accagcagagtaacttacatgcacagcaggtaga |
3202244 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 11 - 244
Target Start/End: Original strand, 3207985 - 3208218
Alignment:
| Q |
11 |
aatgatacaggccatgctgctagaatgttcactccaggtccaattatgtctggtttcagaattcctgggctttcttggtttggtcctcttgatgaaaagt |
110 |
Q |
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||||||| ||||||| | || |||||||||| |||||| |||| ||||||||||||||||||||| |||||| ||| | |||| |||||||||||||| |
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| T |
3207985 |
aatgatataggccatcccgcaagaatgttcaatccaggcccaagtatgtctggtttcagaattccagggcttgctttgcttggacctcttgatgaaaatg |
3208084 |
T |
|
| Q |
111 |
aagctacttgaggggcattgggatttccaataacagttccattgaataaaatcgtggccattggtgttgaagttgagtttatataatctttgatggataa |
210 |
Q |
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|||| |||||||||||||||||||||||||| |||||||| ||||||||||| |||||||||||||| |||||||| ||||||||||||| |||| ||| |
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| T |
3208085 |
aagcaacttgaggggcattgggatttccaatgacagttcctttgaataaaattgtggccattggtgtggaagttgaatttatataatcttggatgtttaa |
3208184 |
T |
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| Q |
211 |
accagcagagtaacttacaagtgcagcaggtaga |
244 |
Q |
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||||||||||||||||||| | ||||||||||| |
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| T |
3208185 |
accagcagagtaacttacatgcacagcaggtaga |
3208218 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 17 - 112
Target Start/End: Original strand, 3225832 - 3225927
Alignment:
| Q |
17 |
acaggccatgctgctagaatgttcactccaggtccaattatgtctggtttcagaattcctgggctttcttggtttggtcctcttgatgaaaagtaa |
112 |
Q |
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|||| |||||| ||||||||||| || || || ||||| ||||||||||| ||||||||||| ||||||||| ||||||||||||| ||||||||| |
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| T |
3225832 |
acagcccatgcagctagaatgttgacacctggaccaatgatgtctggtttaagaattcctggactttcttggcttggtcctcttgaagaaaagtaa |
3225927 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 22 - 108
Target Start/End: Original strand, 3231085 - 3231171
Alignment:
| Q |
22 |
ccatgctgctagaatgttcactccaggtccaattatgtctggtttcagaattcctgggctttcttggtttggtcctcttgatgaaaa |
108 |
Q |
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| T |
3231085 |
ccatgcagctagaatgttgacacctggaccaatgatgtctggtttaagaattcctggactttcttggcttggtcctcttgaagaaaa |
3231171 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 17 - 108
Target Start/End: Complemental strand, 3178961 - 3178870
Alignment:
| Q |
17 |
acaggccatgctgctagaatgttcactccaggtccaattatgtctggtttcagaattcctgggctttcttggtttggtcctcttgatgaaaa |
108 |
Q |
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||||||||||| ||||||||||| || || || ||||| ||||||||||| |||||||| || |||| |||| ||||||||||||| ||||| |
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| T |
3178961 |
acaggccatgcagctagaatgttgacacctggaccaatgatgtctggtttaagaattccaggactttgttggcttggtcctcttgaagaaaa |
3178870 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 17 - 108
Target Start/End: Original strand, 3239879 - 3239970
Alignment:
| Q |
17 |
acaggccatgctgctagaatgttcactccaggtccaattatgtctggtttcagaattcctgggctttcttggtttggtcctcttgatgaaaa |
108 |
Q |
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||||||||||| ||||||||||| || || || ||||| ||||||||||| |||||||| || |||| |||| ||||||||||||| ||||| |
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| T |
3239879 |
acaggccatgcagctagaatgttgacacctggaccaatgatgtctggtttaagaattccaggactttgttggcttggtcctcttgaagaaaa |
3239970 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 22 - 108
Target Start/End: Original strand, 3220852 - 3220938
Alignment:
| Q |
22 |
ccatgctgctagaatgttcactccaggtccaattatgtctggtttcagaattcctgggctttcttggtttggtcctcttgatgaaaa |
108 |
Q |
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|||||| ||||||||||| || || || ||||| ||||||||||| |||||||| || ||||||||| ||||||||||||| ||||| |
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| T |
3220852 |
ccatgcagctagaatgttgacacctggaccaatgatgtctggtttaagaattccaggactttcttggcttggtcctcttgaagaaaa |
3220938 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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