View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1511_low_133 (Length: 271)
Name: NF1511_low_133
Description: NF1511
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1511_low_133 |
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| [»] scaffold0427 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 159; Significance: 1e-84; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 7 - 254
Target Start/End: Complemental strand, 4296589 - 4296329
Alignment:
| Q |
7 |
aaaaaagggtaatgttatgaagttgttttgattctctaaaaatgtattatttaatataatttgaagaatatcaaggttcttcaactttgaatataagtgt |
106 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
4296589 |
aaaaaagggtaatgttatgaagttgttttgattctctaaaaatttattctttaatataacttgaagaatatcaaggttcttcaactttgaatataagtgt |
4296490 |
T |
|
| Q |
107 |
cac----------tcaatagaaaattcaagcttagaaaaatagcttaatttgttttagaaaatgtaactgataagttcaatgaattatgttatgtaataa |
196 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||| ||| |
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| T |
4296489 |
cactcaagtccactcaatagaaaattcaagcttagaaaaatagcttaatttgttttagaaaatgtaactgacacgttcaatgaattatgttatgtattaa |
4296390 |
T |
|
| Q |
197 |
atgatga---nnnnnnngaaggataaatgatgatttgttatctcttagcttctagatacac |
254 |
Q |
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||||||| |||||||||||||| ||||||||||||||||| ||||||||||| |
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| T |
4296389 |
atgatgattttttttttgaaggataaatgattatttgttatctcttagcatctagatacac |
4296329 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 148; Significance: 4e-78; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 7 - 203
Target Start/End: Original strand, 3385759 - 3385965
Alignment:
| Q |
7 |
aaaaaagggtaatgttatgaagttgttttgattctctaaaaatgtattatttaatataatttgaagaatatcaaggttcttcaactttgaatataagtgt |
106 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
3385759 |
aaaaaagggtaatgttatgaagttgttttgattctctaaaaatttattctttaatataacttgaagaatatcaaggttcttcaactttgaatataagtgt |
3385858 |
T |
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| Q |
107 |
----------cactcaatagaaaattcaagcttagaaaaatagcttaatttgttttagaaaatgtaactgataagttcaatgaattatgttatgtaataa |
196 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||| ||| |
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| T |
3385859 |
cactcaagtccactcaatagaaaattcaagcttagaaaaatagcttaatttgttttagaaaatgtaactgacacgttcaatgaattatgttatgtattaa |
3385958 |
T |
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| Q |
197 |
atgatga |
203 |
Q |
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||||||| |
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| T |
3385959 |
atgatga |
3385965 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0427 (Bit Score: 106; Significance: 4e-53; HSPs: 1)
Name: scaffold0427
Description:
Target: scaffold0427; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 7 - 254
Target Start/End: Original strand, 7379 - 7626
Alignment:
| Q |
7 |
aaaaaagggtaatgttatgaagttgttttgattctctaaaaatgtattatttaatataatttgaagaatatcaaggttcttcaactttgaatataagtgt |
106 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||| |||||||| ||||||| ||||||||||||||||||||| |
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| T |
7379 |
aaaaaagggtaatgttatgaagttgttttgattctctaaaaatttattctttaatat--------------caaggtttttcaactttgaatataagtgt |
7464 |
T |
|
| Q |
107 |
cact----------caatagaaaattcaagcttagaaaaatagcttaatttgttttagaaaatgtaactgataagttcaatgaattatgttatgtaataa |
196 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||| ||| |
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| T |
7465 |
cactcaagtccactcaatagaaaattcaagcttagaaaaatagcttaatttgttttagaaaatgtaactgacacgttcaatgaattatgttatgtattaa |
7564 |
T |
|
| Q |
197 |
atgatga----nnnnnnngaaggataaatgatgatttgttatctcttagcttctagatacac |
254 |
Q |
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||||||| |||||||||||||| ||||||||||||||| | ||||||||||| |
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| T |
7565 |
atgatgatttttttttttgaaggataaatgattatttgttatctcttaacatctagatacac |
7626 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 106 - 180
Target Start/End: Original strand, 12997248 - 12997323
Alignment:
| Q |
106 |
tcactcaatagaaaattcaagcttagaaaaatagcttaatttgttttagaaa-atgtaactgataagttcaatgaa |
180 |
Q |
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||||||||| |||||||||| |||||| ||| |||||||||||||| | ||| |||||||||||| |||||||||| |
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| T |
12997248 |
tcactcaatggaaaattcaaccttagataaagagcttaatttgtttcaaaaacatgtaactgataggttcaatgaa |
12997323 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 106 - 179
Target Start/End: Original strand, 13012046 - 13012120
Alignment:
| Q |
106 |
tcactcaatagaaaattcaagcttagaaaaatagcttaatttgttttagaaa-atgtaactgataagttcaatga |
179 |
Q |
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||||||||| |||||||||| |||||| ||| |||||| |||||| | ||| |||||||||||| ||||||||| |
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| T |
13012046 |
tcactcaatggaaaattcaaccttagataaagagcttagcttgtttcaaaaacatgtaactgataggttcaatga |
13012120 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 106 - 179
Target Start/End: Original strand, 13030843 - 13030917
Alignment:
| Q |
106 |
tcactcaatagaaaattcaagcttagaaaaatagcttaatttgttttagaaa-atgtaactgataagttcaatga |
179 |
Q |
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||||||||| |||||||||| |||||| ||| | |||| ||||||| | ||| |||||||||||| ||||||||| |
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| T |
13030843 |
tcactcaatggaaaattcaaccttagataaagaacttagtttgtttcaaaaacatgtaactgataggttcaatga |
13030917 |
T |
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