View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1511_low_134 (Length: 270)
Name: NF1511_low_134
Description: NF1511
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1511_low_134 |
 | |
|
| [»] chr4 (1 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 49 - 270
Target Start/End: Original strand, 33948650 - 33948871
Alignment:
| Q |
49 |
ggtaacatcttctggtaggaaaggaagcaggtctttgtctcccttaagagtctcagacatcatagaaaactcagaagataaagatgtttctgtttcttct |
148 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33948650 |
ggtaacatcttctggtaggaaaggaagcaggtctttgtctcccttaagagtctcagacatcatagaaaactcagaagataaagatgtttctgtttcttct |
33948749 |
T |
|
| Q |
149 |
tccacaagtaacaacgtgaaatcgttcttgtctttcactaaaggttatagaaaatggaagataagagattttcttttatttcgaagtgcttctgaaggaa |
248 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33948750 |
tccacaagtaacaacgtgaaatcgttcttgtctttcactaaaggttatagaaaatggaagataagagattttcttttatttcgaagtgcttctgaaggaa |
33948849 |
T |
|
| Q |
249 |
gagctaatgaaaaagatccttt |
270 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
33948850 |
gagctaatgaaaaagatccttt |
33948871 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 182 - 251
Target Start/End: Original strand, 12258090 - 12258159
Alignment:
| Q |
182 |
ttcactaaaggttatagaaaatggaagataagagattttcttttatttcgaagtgcttctgaaggaagag |
251 |
Q |
| |
|
||||| ||||| ||||||||||||| | | ||||||||| |||||||||||||||| |||||||||| |
|
|
| T |
12258090 |
ttcacaaaagggtatagaaaatggagattcaaagattttctactatttcgaagtgcttcagaaggaagag |
12258159 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University