View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1511_low_135 (Length: 269)
Name: NF1511_low_135
Description: NF1511
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1511_low_135 |
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Alignment Details
Target: chr1 (Bit Score: 66; Significance: 3e-29; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 187 - 252
Target Start/End: Complemental strand, 26597503 - 26597438
Alignment:
| Q |
187 |
cagcggcagagtcggatcctgtcgtgcaggaaaaaggctcaagtttgaagctaaggacaatggtat |
252 |
Q |
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| T |
26597503 |
cagcggcagagtcggatcctgtcgtgcaggaaaaaggctcaagtttgaagctaaggacaatggtat |
26597438 |
T |
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Target: chr1; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 63 - 117
Target Start/End: Complemental strand, 26597629 - 26597575
Alignment:
| Q |
63 |
tgttatggtggtcatccatttttcatgtatatatgagaggctagggtatatagtt |
117 |
Q |
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| T |
26597629 |
tgttatggtggtcatccatttttcatgtatatatgagaggctagggtatatagtt |
26597575 |
T |
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