View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1511_low_136 (Length: 269)
Name: NF1511_low_136
Description: NF1511
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1511_low_136 |
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Alignment Details
Target: chr5 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 248
Target Start/End: Original strand, 43345142 - 43345383
Alignment:
| Q |
1 |
agtttggttagtgatgggtctgtgttcgtatacaattgaagaaggtggaggtggtttgttcttagcgtaattgatgtgaaattgattattgtagtattgg |
100 |
Q |
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| T |
43345142 |
agtttggttagtgatgggtctatgttcgtatacaattgaagaaggtggaggtggtttgttcttagcgtaattgatgtgaaattgattattgtagtattgg |
43345241 |
T |
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| Q |
101 |
tgttgtttgtgaggaggtgaagaatcgaaatcatgatcgtcatcatcgtgaaattgatgt---tcatcatcgtcggaatcagagtggaaatcaagatgac |
197 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
43345242 |
tgttgtttgtgaggaggtgaagaatcgaaatcatgatcgtcatcatcgtgaaattgatgttcatcatcatcgtcggaatcagagtggaaatcaagatgac |
43345341 |
T |
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| Q |
198 |
cggaatcatcatcatgatgatcggagtgaggtggagaaggggaagagtgtt |
248 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
43345342 |
cggaatc---------atgatcggagtgaggtggagaaggggaagagtgtt |
43345383 |
T |
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