View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1511_low_138 (Length: 265)

Name: NF1511_low_138
Description: NF1511
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1511_low_138
NF1511_low_138
[»] chr3 (19 HSPs)
chr3 (165-250)||(54194425-54194510)
chr3 (10-57)||(54194240-54194287)
chr3 (139-220)||(30574021-30574102)
chr3 (182-223)||(20669102-20669143)
chr3 (187-231)||(50952262-50952306)
chr3 (159-210)||(5331184-5331235)
chr3 (181-224)||(35127476-35127519)
chr3 (181-219)||(402651-402689)
chr3 (190-224)||(905075-905109)
chr3 (190-224)||(2128356-2128390)
chr3 (182-224)||(20669547-20669589)
chr3 (190-224)||(33674758-33674792)
chr3 (190-224)||(41028956-41028990)
chr3 (138-224)||(44014898-44014984)
chr3 (178-219)||(34638075-34638116)
chr3 (155-224)||(49465768-49465837)
chr3 (188-236)||(21661443-21661491)
chr3 (199-231)||(42084349-42084381)
chr3 (182-222)||(47319376-47319416)
[»] chr8 (16 HSPs)
chr8 (139-224)||(37353353-37353438)
chr8 (179-240)||(37444504-37444565)
chr8 (181-224)||(26215418-26215461)
chr8 (189-240)||(37152979-37153030)
chr8 (182-224)||(10114413-10114455)
chr8 (179-224)||(31916535-31916580)
chr8 (181-231)||(3936771-3936821)
chr8 (190-224)||(8536153-8536187)
chr8 (138-224)||(16162644-16162730)
chr8 (181-223)||(25097336-25097378)
chr8 (196-238)||(28769430-28769472)
chr8 (142-224)||(41442540-41442622)
chr8 (181-214)||(40859833-40859866)
chr8 (196-224)||(5290578-5290606)
chr8 (172-224)||(8216793-8216845)
chr8 (188-224)||(14280506-14280542)
[»] chr7 (11 HSPs)
chr7 (158-231)||(33552919-33552992)
chr7 (182-231)||(33673001-33673050)
chr7 (146-214)||(7612346-7612414)
chr7 (193-239)||(33871198-33871244)
chr7 (198-231)||(27481392-27481425)
chr7 (191-224)||(33894555-33894588)
chr7 (139-224)||(43250784-43250869)
chr7 (190-231)||(46213734-46213775)
chr7 (179-224)||(47177556-47177601)
chr7 (156-220)||(21619304-21619368)
chr7 (180-224)||(40009391-40009435)
[»] chr5 (23 HSPs)
chr5 (139-224)||(30291141-30291226)
chr5 (139-224)||(42573884-42573969)
chr5 (139-223)||(14675006-14675090)
chr5 (181-224)||(39248022-39248065)
chr5 (181-219)||(39105386-39105424)
chr5 (139-224)||(6593180-6593265)
chr5 (190-231)||(20982233-20982274)
chr5 (190-231)||(29588811-29588852)
chr5 (155-220)||(41819508-41819573)
chr5 (187-219)||(34112803-34112835)
chr5 (189-240)||(1465108-1465159)
chr5 (139-224)||(11714971-11715049)
chr5 (139-214)||(28776856-28776930)
chr5 (190-219)||(706394-706423)
chr5 (155-224)||(1618988-1619057)
chr5 (187-224)||(4014529-4014566)
chr5 (143-220)||(5963391-5963468)
chr5 (139-220)||(8089679-8089760)
chr5 (155-224)||(10771983-10772052)
chr5 (179-224)||(42099965-42100010)
chr5 (181-221)||(6096465-6096505)
chr5 (196-224)||(7096232-7096260)
chr5 (196-224)||(13224366-13224394)
[»] chr4 (15 HSPs)
chr4 (155-224)||(42641738-42641807)
chr4 (139-223)||(50298411-50298495)
chr4 (155-220)||(17751231-17751296)
chr4 (139-224)||(30066871-30066956)
chr4 (196-240)||(24160927-24160971)
chr4 (189-224)||(6364079-6364114)
chr4 (189-240)||(7601689-7601740)
chr4 (181-240)||(23503481-23503540)
chr4 (181-224)||(49004075-49004118)
chr4 (190-224)||(2980576-2980610)
chr4 (190-224)||(4191670-4191704)
chr4 (190-224)||(47970249-47970283)
chr4 (190-231)||(4663794-4663835)
chr4 (187-220)||(53137967-53138000)
chr4 (196-224)||(25487650-25487678)
[»] chr2 (10 HSPs)
chr2 (189-224)||(15288711-15288746)
chr2 (139-210)||(42659280-42659350)
chr2 (180-221)||(32364832-32364873)
chr2 (140-224)||(39567784-39567868)
chr2 (181-224)||(40682478-40682521)
chr2 (172-219)||(44600452-44600499)
chr2 (191-224)||(41033055-41033088)
chr2 (196-224)||(5133709-5133737)
chr2 (200-232)||(7193949-7193981)
chr2 (190-238)||(10143103-10143151)
[»] chr1 (12 HSPs)
chr1 (179-217)||(15784255-15784293)
chr1 (181-218)||(5894274-5894311)
chr1 (155-224)||(37841894-37841963)
chr1 (172-224)||(1829059-1829111)
chr1 (157-225)||(38116289-38116357)
chr1 (190-233)||(13037795-13037838)
chr1 (187-218)||(23544751-23544782)
chr1 (196-230)||(2462904-2462938)
chr1 (155-224)||(4549762-4549831)
chr1 (184-224)||(4445633-4445673)
chr1 (140-224)||(7137106-7137190)
chr1 (190-222)||(39339854-39339886)
[»] chr6 (11 HSPs)
chr6 (180-224)||(9093661-9093705)
chr6 (155-238)||(6654511-6654594)
chr6 (196-231)||(10452458-10452493)
chr6 (190-224)||(31461609-31461643)
chr6 (190-224)||(31668790-31668824)
chr6 (191-224)||(4247739-4247772)
chr6 (179-224)||(10401123-10401168)
chr6 (183-224)||(24476526-24476567)
chr6 (190-238)||(3171522-3171570)
chr6 (158-210)||(6538406-6538458)
chr6 (190-230)||(29249405-29249445)
[»] scaffold0590 (1 HSPs)
scaffold0590 (190-224)||(1179-1213)
[»] scaffold0275 (1 HSPs)
scaffold0275 (190-224)||(2762-2796)
[»] scaffold0019 (1 HSPs)
scaffold0019 (187-224)||(104239-104276)
[»] scaffold0654 (1 HSPs)
scaffold0654 (190-238)||(6728-6776)
[»] scaffold0014 (1 HSPs)
scaffold0014 (190-238)||(116647-116695)


Alignment Details
Target: chr3 (Bit Score: 86; Significance: 3e-41; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 165 - 250
Target Start/End: Original strand, 54194425 - 54194510
Alignment:
Q  165 gctcattgcatatacacttatgatgataagcgcttatgtataagctatttctataacaaagtataaagttaagttatgtgataagt 250  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54194425 gctcattgcatatacacttatgatgataagcgcttatgtataagctatttctataacaaagtataaagttaagttatgtgataagt 54194510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 10 - 57
Target Start/End: Original strand, 54194240 - 54194287
Alignment:
Q  10 aagaatatgtagtggttcaaattaagatcttttcatatgttgcttctt 57  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  54194240 aagaatatgtagtggttcaaattaagatcttttcatatgttgcttctt 54194287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 139 - 220
Target Start/End: Complemental strand, 30574102 - 30574021
Alignment:
Q  139 tgtttggataaagaaattaatttgcagctcattgcatatacacttatgatgataagcgcttatgtataagctatttctataa 220  Q
    |||||||||||| |   |||||||||||| ||  ||||  || |||| ||||||||||||||||||||||||||||||||||    
T  30574102 tgtttggataaacaccataatttgcagcttatatcataagcatttatcatgataagcgcttatgtataagctatttctataa 30574021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 182 - 223
Target Start/End: Original strand, 20669102 - 20669143
Alignment:
Q  182 ttatgatgataagcgcttatgtataagctatttctataacaa 223  Q
    |||| ||||||||| |||||||||||||||||||||||||||    
T  20669102 ttatcatgataagcacttatgtataagctatttctataacaa 20669143  T

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Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 187 - 231
Target Start/End: Original strand, 50952262 - 50952306
Alignment:
Q  187 atgataagcgcttatgtataagctatttctataacaaagtataaa 231  Q
    |||||||||||||  |||||||||||||||||||||||| |||||    
T  50952262 atgataagcgcttgagtataagctatttctataacaaaggataaa 50952306  T

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Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 159 - 210
Target Start/End: Original strand, 5331184 - 5331235
Alignment:
Q  159 tttgcagctcattgcatatacacttatgatgataagcgcttatgtataagct 210  Q
    ||||||||| || ||||| ||||||||||| |||||| ||||||||||||||    
T  5331184 tttgcagcttatagcataaacacttatgataataagcacttatgtataagct 5331235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 181 - 224
Target Start/End: Complemental strand, 35127519 - 35127476
Alignment:
Q  181 cttatgatgataagcgcttatgtataagctatttctataacaaa 224  Q
    ||||| |||||||| ||||||||||| |||||||||||||||||    
T  35127519 cttatcatgataagtgcttatgtataggctatttctataacaaa 35127476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 219
Target Start/End: Complemental strand, 402689 - 402651
Alignment:
Q  181 cttatgatgataagcgcttatgtataagctatttctata 219  Q
    ||||| |||||||| ||||||||||||||||||||||||    
T  402689 cttatcatgataagggcttatgtataagctatttctata 402651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 190 - 224
Target Start/End: Complemental strand, 905109 - 905075
Alignment:
Q  190 ataagcgcttatgtataagctatttctataacaaa 224  Q
    ||||||||||| |||||||||||||||||||||||    
T  905109 ataagcgcttaagtataagctatttctataacaaa 905075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 190 - 224
Target Start/End: Complemental strand, 2128390 - 2128356
Alignment:
Q  190 ataagcgcttatgtataagctatttctataacaaa 224  Q
    ||||||| |||||||||||||||||||||||||||    
T  2128390 ataagcgtttatgtataagctatttctataacaaa 2128356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 182 - 224
Target Start/End: Original strand, 20669547 - 20669589
Alignment:
Q  182 ttatgatgataagcgcttatgtataagctatttctataacaaa 224  Q
    |||| ||||||| | ||||||||||||||||||||||||||||    
T  20669547 ttatcatgataaacacttatgtataagctatttctataacaaa 20669589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 190 - 224
Target Start/End: Complemental strand, 33674792 - 33674758
Alignment:
Q  190 ataagcgcttatgtataagctatttctataacaaa 224  Q
    |||||||||||| ||||||||||||||||||||||    
T  33674792 ataagcgcttatttataagctatttctataacaaa 33674758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 190 - 224
Target Start/End: Complemental strand, 41028990 - 41028956
Alignment:
Q  190 ataagcgcttatgtataagctatttctataacaaa 224  Q
    ||||| |||||||||||||||||||||||||||||    
T  41028990 ataagtgcttatgtataagctatttctataacaaa 41028956  T

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Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 138 - 224
Target Start/End: Complemental strand, 44014984 - 44014898
Alignment:
Q  138 ttgtttggataaagaaattaatttgcagctcattgcatatacacttatgatgataagcgcttatgtataagctatttctataacaaa 224  Q
    ||||||||||||| ||||||||||| || | || ||||| |   |||| |||||||  ||||||||| |||||||||| ||||||||    
T  44014984 ttgtttggataaacaaattaatttgtagtttatagcatacatgtttatcatgataaatgcttatgtagaagctatttccataacaaa 44014898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 178 - 219
Target Start/End: Complemental strand, 34638116 - 34638075
Alignment:
Q  178 acacttatgatgataagcgcttatgtataagctatttctata 219  Q
    |||||||| ||||||| ||||||| |||||||||||||||||    
T  34638116 acacttatcatgataaccgcttatatataagctatttctata 34638075  T

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Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 155 - 224
Target Start/End: Complemental strand, 49465837 - 49465768
Alignment:
Q  155 ttaatttgcagctcattgcatatacacttatgatgataagcgcttatgtataagctatttctataacaaa 224  Q
    ||||||||||| | || |||||  ||||||| |||| || ||||||||| |||||||||| |||||||||    
T  49465837 ttaatttgcagtttatagcataatcacttatcatgagaaacgcttatgtgtaagctatttttataacaaa 49465768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 188 - 236
Target Start/End: Original strand, 21661443 - 21661491
Alignment:
Q  188 tgataagcgcttatgtataagctatttctataacaaagtataaagttaa 236  Q
    |||||| | ||||||||||||||||||| |||||||| |||||| ||||    
T  21661443 tgataaacacttatgtataagctatttcaataacaaaatataaaattaa 21661491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 199 - 231
Target Start/End: Complemental strand, 42084381 - 42084349
Alignment:
Q  199 tatgtataagctatttctataacaaagtataaa 231  Q
    ||||||||||||||||||||||||||| |||||    
T  42084381 tatgtataagctatttctataacaaaggataaa 42084349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 182 - 222
Target Start/End: Complemental strand, 47319416 - 47319376
Alignment:
Q  182 ttatgatgataagcgcttatgtataagctatttctataaca 222  Q
    |||| ||||||| | ||||||||||||||||||||||||||    
T  47319416 ttatcatgataaacacttatgtataagctatttctataaca 47319376  T

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Target: chr8 (Bit Score: 46; Significance: 3e-17; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 139 - 224
Target Start/End: Complemental strand, 37353438 - 37353353
Alignment:
Q  139 tgtttggataaagaaattaatttgcagctcattgcatatacacttatgatgataagcgcttatgtataagctatttctataacaaa 224  Q
    |||||||||||| || || |||||||||| || ||||| |  |||||||||||||||||||||||| || ||||||||||||||||    
T  37353438 tgtttggataaacaacttgatttgcagcttatagcataaatgcttatgatgataagcgcttatgtacaaactatttctataacaaa 37353353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 179 - 240
Target Start/End: Complemental strand, 37444565 - 37444504
Alignment:
Q  179 cacttatgatgataagcgcttatgtataagctatttctataacaaagtataaagttaagtta 240  Q
    ||||||| ||||||||||||||||||||||||||| ||||||||||  ||||||| ||||||    
T  37444565 cacttatcatgataagcgcttatgtataagctattactataacaaaagataaagtaaagtta 37444504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 181 - 224
Target Start/End: Original strand, 26215418 - 26215461
Alignment:
Q  181 cttatgatgataagcgcttatgtataagctatttctataacaaa 224  Q
    ||||| ||||||||||||||||||||||||||||||||||||||    
T  26215418 cttataatgataagcgcttatgtataagctatttctataacaaa 26215461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 189 - 240
Target Start/End: Complemental strand, 37153030 - 37152979
Alignment:
Q  189 gataagcgcttatgtataagctatttctataacaaagtataaagttaagtta 240  Q
    |||||||||||||||||||  |||||||||||||||||||||| | ||||||    
T  37153030 gataagcgcttatgtataatatatttctataacaaagtataaaataaagtta 37152979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 182 - 224
Target Start/End: Original strand, 10114413 - 10114455
Alignment:
Q  182 ttatgatgataagcgcttatgtataagctatttctataacaaa 224  Q
    ||||||||||||| |||||||||||||||||||||||| ||||    
T  10114413 ttatgatgataagtgcttatgtataagctatttctatagcaaa 10114455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 179 - 224
Target Start/End: Original strand, 31916535 - 31916580
Alignment:
Q  179 cacttatgatgataagcgcttatgtataagctatttctataacaaa 224  Q
    ||||||| ||||||||||||||||||||||||  ||||||||||||    
T  31916535 cacttatcatgataagcgcttatgtataagcttattctataacaaa 31916580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 231
Target Start/End: Original strand, 3936771 - 3936821
Alignment:
Q  181 cttatgatgataagcgcttatgtataagctatttctataacaaagtataaa 231  Q
    ||||| |||||| || ||||||||||| ||||||||||||||||| |||||    
T  3936771 cttatcatgataggcacttatgtataatctatttctataacaaaggataaa 3936821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 190 - 224
Target Start/End: Complemental strand, 8536187 - 8536153
Alignment:
Q  190 ataagcgcttatgtataagctatttctataacaaa 224  Q
    ||||| |||||||||||||||||||||||||||||    
T  8536187 ataagtgcttatgtataagctatttctataacaaa 8536153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 138 - 224
Target Start/End: Original strand, 16162644 - 16162730
Alignment:
Q  138 ttgtttggataaagaaattaatttgcagctcattgcatatacacttatgatgataagcgcttatgtataagctatttctataacaaa 224  Q
    ||||||||||||| ||||||||||| || | || ||||| |   |||| |||||||  ||||||||| |||||||||| ||||||||    
T  16162644 ttgtttggataaacaaattaatttgtagtttatagcatacatgtttatcatgataaatgcttatgtagaagctatttccataacaaa 16162730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 223
Target Start/End: Original strand, 25097336 - 25097378
Alignment:
Q  181 cttatgatgataagcgcttatgtataagctatttctataacaa 223  Q
    ||||| ||||||||||||||||||| |||||| ||||||||||    
T  25097336 cttatcatgataagcgcttatgtattagctatctctataacaa 25097378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 196 - 238
Target Start/End: Complemental strand, 28769472 - 28769430
Alignment:
Q  196 gcttatgtataagctatttctataacaaagtataaagttaagt 238  Q
    |||||||||||||||||| |||||||||| |||||| ||||||    
T  28769472 gcttatgtataagctattcctataacaaactataaaattaagt 28769430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 142 - 224
Target Start/End: Complemental strand, 41442622 - 41442540
Alignment:
Q  142 ttggataaagaaattaatttgcagctcattgcatatacacttatgatgataagcgcttatgtataagctatttctataacaaa 224  Q
    ||||||||| |  |||||||  |||| || ||||| |||||||| ||||||||  |||||||||| ||| |||||||||||||    
T  41442622 ttggataaacagcttaatttttagcttatagcataaacacttatcatgataagtacttatgtataggctttttctataacaaa 41442540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 181 - 214
Target Start/End: Complemental strand, 40859866 - 40859833
Alignment:
Q  181 cttatgatgataagcgcttatgtataagctattt 214  Q
    ||||| ||||||||||||||||||||||||||||    
T  40859866 cttatcatgataagcgcttatgtataagctattt 40859833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 196 - 224
Target Start/End: Original strand, 5290578 - 5290606
Alignment:
Q  196 gcttatgtataagctatttctataacaaa 224  Q
    |||||||||||||||||||||||||||||    
T  5290578 gcttatgtataagctatttctataacaaa 5290606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 172 - 224
Target Start/End: Original strand, 8216793 - 8216845
Alignment:
Q  172 gcatatacacttatgatgataagcgcttatgtataagctatttctataacaaa 224  Q
    ||||| |||||||| ||||||| | ||||||||||||| |||| |||||||||    
T  8216793 gcataaacacttatcatgataaacacttatgtataagccatttatataacaaa 8216845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 188 - 224
Target Start/End: Complemental strand, 14280542 - 14280506
Alignment:
Q  188 tgataagcgcttatgtataagctatttctataacaaa 224  Q
    |||||||||||||||||||| ||||||||||| ||||    
T  14280542 tgataagcgcttatgtataacctatttctatagcaaa 14280506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 158 - 231
Target Start/End: Complemental strand, 33552992 - 33552919
Alignment:
Q  158 atttgcagctcattgcatatacacttatgatgataagcgcttatgtataagctatttctataacaaagtataaa 231  Q
    |||||||||| |||||| |  ||||||  ||||||||||||||||||||||||||||||||||  |||||||||    
T  33552992 atttgcagcttattgcacaagcacttaccatgataagcgcttatgtataagctatttctataatgaagtataaa 33552919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 182 - 231
Target Start/End: Original strand, 33673001 - 33673050
Alignment:
Q  182 ttatgatgataagcgcttatgtataagctatttctataacaaagtataaa 231  Q
    |||| ||||||||||||||||||||||||| ||||||| ||||| |||||    
T  33673001 ttattatgataagcgcttatgtataagctacttctatagcaaaggataaa 33673050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 146 - 214
Target Start/End: Original strand, 7612346 - 7612414
Alignment:
Q  146 ataaagaaattaatttgcagctcattgcatatacacttatgatgataagcgcttatgtataagctattt 214  Q
    ||||| || ||||||||||||| || |||||  ||||||| ||||||||| | ||||||||||||||||    
T  7612346 ataaacaacttaatttgcagcttatagcataagcacttatcatgataagctcatatgtataagctattt 7612414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 193 - 239
Target Start/End: Original strand, 33871198 - 33871244
Alignment:
Q  193 agcgcttatgtataagctatttctataacaaagtataaagttaagtt 239  Q
    |||||||||||||||||||||||||| | ||| |||||| |||||||    
T  33871198 agcgcttatgtataagctatttctattataaaatataaaattaagtt 33871244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 198 - 231
Target Start/End: Complemental strand, 27481425 - 27481392
Alignment:
Q  198 ttatgtataagctatttctataacaaagtataaa 231  Q
    |||||||||||||||||||||||||||| |||||    
T  27481425 ttatgtataagctatttctataacaaaggataaa 27481392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 191 - 224
Target Start/End: Original strand, 33894555 - 33894588
Alignment:
Q  191 taagcgcttatgtataagctatttctataacaaa 224  Q
    |||| |||||||||||||||||||||||||||||    
T  33894555 taagtgcttatgtataagctatttctataacaaa 33894588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 139 - 224
Target Start/End: Complemental strand, 43250869 - 43250784
Alignment:
Q  139 tgtttggataaagaaattaatttgcagctcattgcatatacacttatgatgataagcgcttatgtataagctatttctataacaaa 224  Q
    |||||||||||| || || |||||||||| || || ||  ||||||  |||||||||  ||||||||||||||| |||| ||||||    
T  43250869 tgtttggataaacaactttatttgcagctgatagcttaagcacttaccatgataagcctttatgtataagctatgtctagaacaaa 43250784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 190 - 231
Target Start/End: Original strand, 46213734 - 46213775
Alignment:
Q  190 ataagcgcttatgtataagctatttctataacaaagtataaa 231  Q
    ||||| ||||||||| ||||||||||||||||||| ||||||    
T  46213734 ataagtgcttatgtaaaagctatttctataacaaaatataaa 46213775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 179 - 224
Target Start/End: Original strand, 47177556 - 47177601
Alignment:
Q  179 cacttatgatgataagcgcttatgtataagctatttctataacaaa 224  Q
    ||||||||||||||||| ||| |||||||| |||||||||| ||||    
T  47177556 cacttatgatgataagcccttctgtataaggtatttctatatcaaa 47177601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 156 - 220
Target Start/End: Original strand, 21619304 - 21619368
Alignment:
Q  156 taatttgcagctcattgcatatacacttatgatgataagcgcttatgtataagctatttctataa 220  Q
    |||||||||||| || ||| |  ||||||| ||||||||| ||||| | ||||||||||||||||    
T  21619304 taatttgcagcttatagcacaagcacttatcatgataagcacttatctctaagctatttctataa 21619368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 180 - 224
Target Start/End: Original strand, 40009391 - 40009435
Alignment:
Q  180 acttatgatgataagcgcttatgtataagctatttctataacaaa 224  Q
    |||||| ||||| |||||||||||||||||| ||| |||||||||    
T  40009391 acttatcatgattagcgcttatgtataagctgtttttataacaaa 40009435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 23)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 139 - 224
Target Start/End: Original strand, 30291141 - 30291226
Alignment:
Q  139 tgtttggataaagaaattaatttgcagctcattgcatatacacttatgatgataagcgcttatgtataagctatttctataacaaa 224  Q
    |||||||||||  || ||||||||||||| || ||||| |||||||| ||||||| |||||||| |||| ||||||| ||||||||    
T  30291141 tgtttggataaccaacttaatttgcagcttatagcataaacacttatcatgataaacgcttatgcataacctatttccataacaaa 30291226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 139 - 224
Target Start/End: Complemental strand, 42573969 - 42573884
Alignment:
Q  139 tgtttggataaagaaattaatttgcagctcattgcatatacacttatgatgataagcgcttatgtataagctatttctataacaaa 224  Q
    |||||||||||| |  ||||||||||||| || || |   | ||||| ||||||||||||||||||||||||||||||||||||||    
T  42573969 tgtttggataaacagcttaatttgcagcttatagcctgagcgcttatcatgataagcgcttatgtataagctatttctataacaaa 42573884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 139 - 223
Target Start/End: Complemental strand, 14675090 - 14675006
Alignment:
Q  139 tgtttggataaagaaattaatttgcagctcattgcatatacacttatgatgataagcgcttatgtataagctatttctataacaa 223  Q
    |||||||| ||| || ||||||||||||| || ||||| | | |||| |||||||| ||||||||| ||||||||||||||||||    
T  14675090 tgtttggacaaacaacttaatttgcagcttatggcataaatagttatcatgataagtgcttatgtagaagctatttctataacaa 14675006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 181 - 224
Target Start/End: Original strand, 39248022 - 39248065
Alignment:
Q  181 cttatgatgataagcgcttatgtataagctatttctataacaaa 224  Q
    |||||||||||||||||||||||| |||||||||||||| ||||    
T  39248022 cttatgatgataagcgcttatgtaaaagctatttctatagcaaa 39248065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 181 - 219
Target Start/End: Original strand, 39105386 - 39105424
Alignment:
Q  181 cttatgatgataagcgcttatgtataagctatttctata 219  Q
    ||||| |||||||||||||||||||||||||||||||||    
T  39105386 cttatcatgataagcgcttatgtataagctatttctata 39105424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 139 - 224
Target Start/End: Original strand, 6593180 - 6593265
Alignment:
Q  139 tgtttggataaagaaattaatttgcagctcattgcatatacacttatgatgataagcgcttatgtataagctatttctataacaaa 224  Q
    |||||||||||| || ||||||| ||||| || |||||  || ||||  ||||| |||||||||||||| | ||||||||||||||    
T  6593180 tgtttggataaacaacttaatttacagcttatagcataatcatttatcttgatacgcgcttatgtataaacaatttctataacaaa 6593265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 190 - 231
Target Start/End: Complemental strand, 20982274 - 20982233
Alignment:
Q  190 ataagcgcttatgtataagctatttctataacaaagtataaa 231  Q
    ||||| |||||||||||||||||||||||||||||| |||||    
T  20982274 ataagtgcttatgtataagctatttctataacaaaggataaa 20982233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 190 - 231
Target Start/End: Original strand, 29588811 - 29588852
Alignment:
Q  190 ataagcgcttatgtataagctatttctataacaaagtataaa 231  Q
    ||||| ||||||||||||||||||||||||||||| ||||||    
T  29588811 ataagtgcttatgtataagctatttctataacaaaatataaa 29588852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 155 - 220
Target Start/End: Original strand, 41819508 - 41819573
Alignment:
Q  155 ttaatttgcagctcattgcatatacacttatgatgataagcgcttatgtataagctatttctataa 220  Q
    ||||||| ||||| || ||||| |||||||| ||||| |||| || ||||||||||||||||||||    
T  41819508 ttaatttacagcttatagcataaacacttatcatgatgagcggttttgtataagctatttctataa 41819573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 187 - 219
Target Start/End: Original strand, 34112803 - 34112835
Alignment:
Q  187 atgataagcgcttatgtataagctatttctata 219  Q
    |||||||||||||||||||||||||||||||||    
T  34112803 atgataagcgcttatgtataagctatttctata 34112835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 189 - 240
Target Start/End: Complemental strand, 1465159 - 1465108
Alignment:
Q  189 gataagcgcttatgtataagctatttctataacaaagtataaagttaagtta 240  Q
    ||||||||||||||||||||||||||||||| || || ||||| | ||||||    
T  1465159 gataagcgcttatgtataagctatttctatagcataggataaaataaagtta 1465108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 139 - 224
Target Start/End: Complemental strand, 11715049 - 11714971
Alignment:
Q  139 tgtttggataaagaaattaatttgcagctcattgcatatacacttatgatgataagcgcttatgtataagctatttctataacaaa 224  Q
    |||||||||||| || |||||||||||||       ||| |||||||  |||||||||||| | ||||||||||||||||||||||    
T  11715049 tgtttggataaacaacttaatttgcagct-------tatccacttattgtgataagcgcttgtatataagctatttctataacaaa 11714971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 139 - 214
Target Start/End: Original strand, 28776856 - 28776930
Alignment:
Q  139 tgtttggataaagaaattaatttgcagctcattgcatatacacttatgatgataagcgcttatgtataagctattt 214  Q
    |||||||||||| || ||| ||||||||| || || ||  ||||||| |||||||| |||||||||||||||||||    
T  28776856 tgtttggataaacaactta-tttgcagcttatagcctaagcacttatcatgataagtgcttatgtataagctattt 28776930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 190 - 219
Target Start/End: Original strand, 706394 - 706423
Alignment:
Q  190 ataagcgcttatgtataagctatttctata 219  Q
    ||||||||||||||||||||||||||||||    
T  706394 ataagcgcttatgtataagctatttctata 706423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 155 - 224
Target Start/End: Original strand, 1618988 - 1619057
Alignment:
Q  155 ttaatttgcagctcattgcatatacacttatgatgataagcgcttatgtataagctatttctataacaaa 224  Q
    ||||||||| ||| || |||||  | ||| ||||||||||| ||| ||||||||||||||||| ||||||    
T  1618988 ttaatttgctgcttatagcataagcgcttttgatgataagcacttttgtataagctatttctaaaacaaa 1619057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 187 - 224
Target Start/End: Complemental strand, 4014566 - 4014529
Alignment:
Q  187 atgataagcgcttatgtataagctatttctataacaaa 224  Q
    ||||||||||| ||||||||||||||||||||| ||||    
T  4014566 atgataagcgcctatgtataagctatttctatagcaaa 4014529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 143 - 220
Target Start/End: Complemental strand, 5963468 - 5963391
Alignment:
Q  143 tggataaagaaattaatttgcagctcattgcatatacacttatgatgataagcgcttatgtataagctatttctataa 220  Q
    |||||||| || ||||||||||  | || |||||  || |||| |||||||||||||||||| || ||||||||||||    
T  5963468 tggataaacaacttaatttgcaatttatagcataagcatttatcatgataagcgcttatgtacaaactatttctataa 5963391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 139 - 220
Target Start/End: Original strand, 8089679 - 8089760
Alignment:
Q  139 tgtttggataaagaaattaatttgcagctcattgcatatacacttatgatgataagcgcttatgtataagctatttctataa 220  Q
    |||||||||||| || |||||||| ||||||| |||||     |||| ||||||||||||||| | || |||||||||||||    
T  8089679 tgtttggataaacaacttaatttgtagctcatagcataagtgtttatcatgataagcgcttatctgtatgctatttctataa 8089760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 155 - 224
Target Start/End: Complemental strand, 10772052 - 10771983
Alignment:
Q  155 ttaatttgcagctcattgcatatacacttatgatgataagcgcttatgtataagctatttctataacaaa 224  Q
    ||||||||||||| || |||||    ||||| ||||||| | | ||||||||||||||||||||||||||    
T  10772052 ttaatttgcagcttatagcataagtgcttatcatgataaacacatatgtataagctatttctataacaaa 10771983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 179 - 224
Target Start/End: Complemental strand, 42100010 - 42099965
Alignment:
Q  179 cacttatgatgataagcgcttatgtataagctatttctataacaaa 224  Q
    ||||||| |||||||| ||||||||||||||||||| |||| ||||    
T  42100010 cacttatcatgataagtgcttatgtataagctatttatatagcaaa 42099965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 181 - 221
Target Start/End: Original strand, 6096465 - 6096505
Alignment:
Q  181 cttatgatgataagcgcttatgtataagctatttctataac 221  Q
    ||||| ||||||||| |||||||||||||||||| ||||||    
T  6096465 cttatcatgataagcacttatgtataagctatttttataac 6096505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 196 - 224
Target Start/End: Complemental strand, 7096260 - 7096232
Alignment:
Q  196 gcttatgtataagctatttctataacaaa 224  Q
    |||||||||||||||||||||||||||||    
T  7096260 gcttatgtataagctatttctataacaaa 7096232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 196 - 224
Target Start/End: Original strand, 13224366 - 13224394
Alignment:
Q  196 gcttatgtataagctatttctataacaaa 224  Q
    |||||||||||||||||||||||||||||    
T  13224366 gcttatgtataagctatttctataacaaa 13224394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 155 - 224
Target Start/End: Complemental strand, 42641807 - 42641738
Alignment:
Q  155 ttaatttgcagctcattgcatatacacttatgatgataagcgcttatgtataagctatttctataacaaa 224  Q
    ||||||||||||| ||| ||||  ||||||| |||||||| | |||||||||||||||||| ||||||||    
T  42641807 ttaatttgcagcttattacataagcacttatcatgataagtgtttatgtataagctatttccataacaaa 42641738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 139 - 223
Target Start/End: Original strand, 50298411 - 50298495
Alignment:
Q  139 tgtttggataaagaaattaatttgcagctcattgcatatacacttatgatgataagcgcttatgtataagctatttctataacaa 223  Q
    |||||||||||| || |||||||| |||| || ||||| |||||||| |||||||  ||||||||||||| | |||| |||||||    
T  50298411 tgtttggataaacaacttaatttgaagcttatagcataaacacttatcatgataaatgcttatgtataagttgtttccataacaa 50298495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 155 - 220
Target Start/End: Complemental strand, 17751296 - 17751231
Alignment:
Q  155 ttaatttgcagctcattgcatatacacttatgatgataagcgcttatgtataagctatttctataa 220  Q
    |||| |||||||| || |||||  ||||| | ||||||||||||||| ||||||||||||||||||    
T  17751296 ttaaattgcagcttatagcataagcacttgtaatgataagcgcttatttataagctatttctataa 17751231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 139 - 224
Target Start/End: Complemental strand, 30066956 - 30066871
Alignment:
Q  139 tgtttggataaagaaattaatttgcagctcattgcatatacacttatgatgataagcgcttatgtataagctatttctataacaaa 224  Q
    |||||| ||||| || ||||||||||||| || |||||  | ||||| ||||||||| ||| |||||||||||||| |||| ||||    
T  30066956 tgtttgcataaacaatttaatttgcagcttatagcataagcgcttataatgataagcacttgtgtataagctatttatataccaaa 30066871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 196 - 240
Target Start/End: Original strand, 24160927 - 24160971
Alignment:
Q  196 gcttatgtataagctatttctataacaaagtataaagttaagtta 240  Q
    |||||||||||||||||||||||||||||| ||||| | ||||||    
T  24160927 gcttatgtataagctatttctataacaaaggataaaatcaagtta 24160971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 189 - 224
Target Start/End: Original strand, 6364079 - 6364114
Alignment:
Q  189 gataagcgcttatgtataagctatttctataacaaa 224  Q
    ||||||| ||||||||||||||||||||||||||||    
T  6364079 gataagcacttatgtataagctatttctataacaaa 6364114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 189 - 240
Target Start/End: Original strand, 7601689 - 7601740
Alignment:
Q  189 gataagcgcttatgtataagctatttctataacaaagtataaagttaagtta 240  Q
    ||||||||||||||||||||||||| ||||| ||||| ||||| | ||||||    
T  7601689 gataagcgcttatgtataagctattcctatagcaaaggataaaataaagtta 7601740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 181 - 240
Target Start/End: Original strand, 23503481 - 23503540
Alignment:
Q  181 cttatgatgataagcgcttatgtataagctatttctataacaaagtataaagttaagtta 240  Q
    ||||| |||||||| |||||||||||| ||| |||||||||||| |||||| | ||||||    
T  23503481 cttatcatgataagtgcttatgtataatctaattctataacaaaatataaaataaagtta 23503540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 181 - 224
Target Start/End: Complemental strand, 49004118 - 49004075
Alignment:
Q  181 cttatgatgataagcgcttatgtataagctatttctataacaaa 224  Q
    ||||| ||||||||||||||||||||||| ||||||||| ||||    
T  49004118 cttataatgataagcgcttatgtataagcaatttctatagcaaa 49004075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 190 - 224
Target Start/End: Complemental strand, 2980610 - 2980576
Alignment:
Q  190 ataagcgcttatgtataagctatttctataacaaa 224  Q
    ||||| |||||||||||||||||||||||||||||    
T  2980610 ataagtgcttatgtataagctatttctataacaaa 2980576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 190 - 224
Target Start/End: Original strand, 4191670 - 4191704
Alignment:
Q  190 ataagcgcttatgtataagctatttctataacaaa 224  Q
    ||||| |||||||||||||||||||||||||||||    
T  4191670 ataagtgcttatgtataagctatttctataacaaa 4191704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 190 - 224
Target Start/End: Original strand, 47970249 - 47970283
Alignment:
Q  190 ataagcgcttatgtataagctatttctataacaaa 224  Q
    ||||| |||||||||||||||||||||||||||||    
T  47970249 ataagtgcttatgtataagctatttctataacaaa 47970283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 190 - 231
Target Start/End: Complemental strand, 4663835 - 4663794
Alignment:
Q  190 ataagcgcttatgtataagctatttctataacaaagtataaa 231  Q
    ||||| ||||||||||||| |||||||||||||||| |||||    
T  4663835 ataagtgcttatgtataagttatttctataacaaagaataaa 4663794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 187 - 220
Target Start/End: Original strand, 53137967 - 53138000
Alignment:
Q  187 atgataagcgcttatgtataagctatttctataa 220  Q
    |||||||||||||||||||||| |||||||||||    
T  53137967 atgataagcgcttatgtataagttatttctataa 53138000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 196 - 224
Target Start/End: Complemental strand, 25487678 - 25487650
Alignment:
Q  196 gcttatgtataagctatttctataacaaa 224  Q
    |||||||||||||||||||||||||||||    
T  25487678 gcttatgtataagctatttctataacaaa 25487650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 189 - 224
Target Start/End: Complemental strand, 15288746 - 15288711
Alignment:
Q  189 gataagcgcttatgtataagctatttctataacaaa 224  Q
    ||||||||||||||||||||||||||||||||||||    
T  15288746 gataagcgcttatgtataagctatttctataacaaa 15288711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 139 - 210
Target Start/End: Complemental strand, 42659350 - 42659280
Alignment:
Q  139 tgtttggataaagaaattaatttgcagctcattgcatatacacttatgatgataagcgcttatgtataagct 210  Q
    ||||||||||| |||| | |||||||||| || ||| | |||||||| ||||||||||||||||||||||||    
T  42659350 tgtttggataa-gaaacttatttgcagctaatagcacacacacttatcatgataagcgcttatgtataagct 42659280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 180 - 221
Target Start/End: Complemental strand, 32364873 - 32364832
Alignment:
Q  180 acttatgatgataagcgcttatgtataagctatttctataac 221  Q
    |||||| ||||||||| |||||||||||||||||||||||||    
T  32364873 acttatcatgataagcacttatgtataagctatttctataac 32364832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 140 - 224
Target Start/End: Original strand, 39567784 - 39567868
Alignment:
Q  140 gtttggataaagaaattaatttgcagctcattgcatatacacttatgatgataagcgcttatgtataagctatttctataacaaa 224  Q
    ||||||||||| |  ||||||  ||||| ||||||||  | ||||| ||||||||| ||| |||||||| |||||||||||||||    
T  39567784 gtttggataaacagcttaattcacagcttattgcataagcgcttatcatgataagcacttgtgtataagatatttctataacaaa 39567868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 181 - 224
Target Start/End: Complemental strand, 40682521 - 40682478
Alignment:
Q  181 cttatgatgataagcgcttatgtataagctatttctataacaaa 224  Q
    ||||| ||| ||||||||||||||||||||||||||||| ||||    
T  40682521 cttatcatggtaagcgcttatgtataagctatttctatagcaaa 40682478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 172 - 219
Target Start/End: Original strand, 44600452 - 44600499
Alignment:
Q  172 gcatatacacttatgatgataagcgcttatgtataagctatttctata 219  Q
    ||||| ||||||||  ||||||| ||||||||||||||||||||||||    
T  44600452 gcatagacacttatcgtgataagtgcttatgtataagctatttctata 44600499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 191 - 224
Target Start/End: Complemental strand, 41033088 - 41033055
Alignment:
Q  191 taagcgcttatgtataagctatttctataacaaa 224  Q
    |||| |||||||||||||||||||||||||||||    
T  41033088 taagtgcttatgtataagctatttctataacaaa 41033055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 196 - 224
Target Start/End: Original strand, 5133709 - 5133737
Alignment:
Q  196 gcttatgtataagctatttctataacaaa 224  Q
    |||||||||||||||||||||||||||||    
T  5133709 gcttatgtataagctatttctataacaaa 5133737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 200 - 232
Target Start/End: Complemental strand, 7193981 - 7193949
Alignment:
Q  200 atgtataagctatttctataacaaagtataaag 232  Q
    ||||||||||||||||||||||||| |||||||    
T  7193981 atgtataagctatttctataacaaaatataaag 7193949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 190 - 238
Target Start/End: Original strand, 10143103 - 10143151
Alignment:
Q  190 ataagcgcttatgtataagctatttctataacaaagtataaagttaagt 238  Q
    ||||| ||||||||||||| |||||||||||||||  ||||| ||||||    
T  10143103 ataagtgcttatgtataagttatttctataacaaaagataaaattaagt 10143151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.00000000009; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 179 - 217
Target Start/End: Original strand, 15784255 - 15784293
Alignment:
Q  179 cacttatgatgataagcgcttatgtataagctatttcta 217  Q
    ||||||| |||||||||||||||||||||||||||||||    
T  15784255 cacttattatgataagcgcttatgtataagctatttcta 15784293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 181 - 218
Target Start/End: Complemental strand, 5894311 - 5894274
Alignment:
Q  181 cttatgatgataagcgcttatgtataagctatttctat 218  Q
    ||||| ||||||||||||||||||||||||||||||||    
T  5894311 cttatcatgataagcgcttatgtataagctatttctat 5894274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 155 - 224
Target Start/End: Original strand, 37841894 - 37841963
Alignment:
Q  155 ttaatttgcagctcattgcatatacacttatgatgataagcgcttatgtataagctatttctataacaaa 224  Q
    ||||||||||||| || |||||  ||||||| ||||||||  || |||||||||||||| ||||||||||    
T  37841894 ttaatttgcagctaatagcataagcacttatcatgataagtactcatgtataagctattcctataacaaa 37841963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 172 - 224
Target Start/End: Complemental strand, 1829111 - 1829059
Alignment:
Q  172 gcatatacacttatgatgataagcgcttatgtataagctatttctataacaaa 224  Q
    ||||| |||||||| ||||||||||||||||||||||  |||| |||||||||    
T  1829111 gcataaacacttatcatgataagcgcttatgtataagtcatttttataacaaa 1829059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 157 - 225
Target Start/End: Complemental strand, 38116357 - 38116289
Alignment:
Q  157 aatttgcagctcattgcatatacacttatgatgataagcgcttatgtataagctatttctataacaaag 225  Q
    ||||||||||| || | | || | ||||| ||||||||||||||||||||||||||||| ||| |||||    
T  38116357 aatttgcagcttatagtacatgcgcttatcatgataagcgcttatgtataagctatttcaatagcaaag 38116289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 190 - 233
Target Start/End: Original strand, 13037795 - 13037838
Alignment:
Q  190 ataagcgcttatgtataagctatttctataacaaagtataaagt 233  Q
    ||||| |||||||||||||||||||||||||||||  |||||||    
T  13037795 ataagtgcttatgtataagctatttctataacaaaagataaagt 13037838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 187 - 218
Target Start/End: Complemental strand, 23544782 - 23544751
Alignment:
Q  187 atgataagcgcttatgtataagctatttctat 218  Q
    ||||||||||||||||||||||||||||||||    
T  23544782 atgataagcgcttatgtataagctatttctat 23544751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 196 - 230
Target Start/End: Original strand, 2462904 - 2462938
Alignment:
Q  196 gcttatgtataagctatttctataacaaagtataa 230  Q
    ||||||||||||||||||||||||||||| |||||    
T  2462904 gcttatgtataagctatttctataacaaaatataa 2462938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 155 - 224
Target Start/End: Original strand, 4549762 - 4549831
Alignment:
Q  155 ttaatttgcagctcattgcatatacacttatgatgataagcgcttatgtataagctatttctataacaaa 224  Q
    ||||||||||||| || ||||| || ||||  | |||||  ||||||||| |||||||||||||||||||    
T  4549762 ttaatttgcagcttatagcataaacgcttagcacgataaatgcttatgtacaagctatttctataacaaa 4549831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 184 - 224
Target Start/End: Original strand, 4445633 - 4445673
Alignment:
Q  184 atgatgataagcgcttatgtataagctatttctataacaaa 224  Q
    ||||| |||||| |||||||||| |||||||||||||||||    
T  4445633 atgataataagcacttatgtataggctatttctataacaaa 4445673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 140 - 224
Target Start/End: Complemental strand, 7137190 - 7137106
Alignment:
Q  140 gtttggataaagaaattaatttgcagctcattgcatatacacttatgatgataagcgcttatgtataagctatttctataacaaa 224  Q
    ||||||||||| |  || |||||||| | || |||||  |||||||  |||||||||||||| ||||| |||||| |||||||||    
T  7137190 gtttggataaacactttcatttgcagtttatagcataggcacttatcttgataagcgcttatatataaactatttttataacaaa 7137106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 190 - 222
Target Start/End: Original strand, 39339854 - 39339886
Alignment:
Q  190 ataagcgcttatgtataagctatttctataaca 222  Q
    ||||| |||||||||||||||||||||||||||    
T  39339854 ataagtgcttatgtataagctatttctataaca 39339886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 180 - 224
Target Start/End: Complemental strand, 9093705 - 9093661
Alignment:
Q  180 acttatgatgataagcgcttatgtataagctatttctataacaaa 224  Q
    |||||| |||||||||||||||| |||||||||||||||| ||||    
T  9093705 acttatcatgataagcgcttatggataagctatttctatatcaaa 9093661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 155 - 238
Target Start/End: Original strand, 6654511 - 6654594
Alignment:
Q  155 ttaatttgcagctcattgcatatacacttatgatgataagcgcttatgtataagctatttctataacaaagtataaagttaagt 238  Q
    ||||||||||||| || ||||  || ||||| |  ||||| ||||||||||||| |||||||||||||||  ||||| ||||||    
T  6654511 ttaatttgcagcttatagcattaacgcttatcaatataagggcttatgtataagttatttctataacaaataataaaattaagt 6654594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 196 - 231
Target Start/End: Complemental strand, 10452493 - 10452458
Alignment:
Q  196 gcttatgtataagctatttctataacaaagtataaa 231  Q
    ||||||||||||||||||||||||||||| ||||||    
T  10452493 gcttatgtataagctatttctataacaaaatataaa 10452458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 190 - 224
Target Start/End: Original strand, 31461609 - 31461643
Alignment:
Q  190 ataagcgcttatgtataagctatttctataacaaa 224  Q
    ||||| |||||||||||||||||||||||||||||    
T  31461609 ataagtgcttatgtataagctatttctataacaaa 31461643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 190 - 224
Target Start/End: Complemental strand, 31668824 - 31668790
Alignment:
Q  190 ataagcgcttatgtataagctatttctataacaaa 224  Q
    ||||| |||||||||||||||||||||||||||||    
T  31668824 ataagtgcttatgtataagctatttctataacaaa 31668790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 191 - 224
Target Start/End: Complemental strand, 4247772 - 4247739
Alignment:
Q  191 taagcgcttatgtataagctatttctataacaaa 224  Q
    |||| |||||||||||||||||||||||||||||    
T  4247772 taagtgcttatgtataagctatttctataacaaa 4247739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 179 - 224
Target Start/End: Complemental strand, 10401168 - 10401123
Alignment:
Q  179 cacttatgatgataagcgcttatgtataagctatttctataacaaa 224  Q
    ||||||| |||||||||||||||||||||| || ||||||| ||||    
T  10401168 cacttatcatgataagcgcttatgtataagttacttctatagcaaa 10401123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 183 - 224
Target Start/End: Original strand, 24476526 - 24476567
Alignment:
Q  183 tatgatgataagcgcttatgtataagctatttctataacaaa 224  Q
    ||||||||||| | ||||||||||||||||||||||| ||||    
T  24476526 tatgatgataaacacttatgtataagctatttctatagcaaa 24476567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 190 - 238
Target Start/End: Complemental strand, 3171570 - 3171522
Alignment:
Q  190 ataagcgcttatgtataagctatttctataacaaagtataaagttaagt 238  Q
    ||||||||||||| ||||||||||| |||||||||  ||||| ||||||    
T  3171570 ataagcgcttatgcataagctatttttataacaaaagataaaattaagt 3171522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 158 - 210
Target Start/End: Original strand, 6538406 - 6538458
Alignment:
Q  158 atttgcagctcattgcatatacacttatgatgataagcgcttatgtataagct 210  Q
    |||||||||| || ||| |  ||||||| ||||||||||||||||||||||||    
T  6538406 atttgcagcttatagcacaagcacttataatgataagcgcttatgtataagct 6538458  T

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Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 190 - 230
Target Start/End: Original strand, 29249405 - 29249445
Alignment:
Q  190 ataagcgcttatgtataagctatttctataacaaagtataa 230  Q
    ||||| |||||||||| |||||||||||||||||| |||||    
T  29249405 ataagtgcttatgtatcagctatttctataacaaaatataa 29249445  T

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Target: scaffold0590 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0590
Description:

Target: scaffold0590; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 190 - 224
Target Start/End: Complemental strand, 1213 - 1179
Alignment:
Q  190 ataagcgcttatgtataagctatttctataacaaa 224  Q
    ||||| |||||||||||||||||||||||||||||    
T  1213 ataagtgcttatgtataagctatttctataacaaa 1179  T

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Target: scaffold0275 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0275
Description:

Target: scaffold0275; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 190 - 224
Target Start/End: Original strand, 2762 - 2796
Alignment:
Q  190 ataagcgcttatgtataagctatttctataacaaa 224  Q
    ||||| |||||||||||||||||||||||||||||    
T  2762 ataagtgcttatgtataagctatttctataacaaa 2796  T

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Target: scaffold0019 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 187 - 224
Target Start/End: Complemental strand, 104276 - 104239
Alignment:
Q  187 atgataagcgcttatgtataagctatttctataacaaa 224  Q
    ||||||| |||||||||||||| |||||||||||||||    
T  104276 atgataaacgcttatgtataagttatttctataacaaa 104239  T

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Target: scaffold0654 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0654
Description:

Target: scaffold0654; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 190 - 238
Target Start/End: Complemental strand, 6776 - 6728
Alignment:
Q  190 ataagcgcttatgtataagctatttctataacaaagtataaagttaagt 238  Q
    ||||| |||||||||||| ||||||||||||||||  ||||| ||||||    
T  6776 ataagtgcttatgtataaactatttctataacaaaaaataaacttaagt 6728  T

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Target: scaffold0014 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 190 - 238
Target Start/End: Complemental strand, 116695 - 116647
Alignment:
Q  190 ataagcgcttatgtataagctatttctataacaaagtataaagttaagt 238  Q
    ||||| |||||||||||| ||||||||||||||||  ||||| ||||||    
T  116695 ataagtgcttatgtataaactatttctataacaaaaaataaacttaagt 116647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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