View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1511_low_14 (Length: 617)
Name: NF1511_low_14
Description: NF1511
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1511_low_14 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 536; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 536; E-Value: 0
Query Start/End: Original strand, 21 - 612
Target Start/End: Original strand, 33638024 - 33638615
Alignment:
| Q |
21 |
ctacaaacataatagtagtcacggaggaatgttataaggacaagagaaagtgcaaaagtaatgtaaatgttgacagcgaaatggtaaaagatgatgatga |
120 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33638024 |
ctacaaacataatagtagtcacggaggaatgttataaggacaagagaaagtgcaaaagtaatgtaaatgttgacagcgaaatggtaaaagatgatgatga |
33638123 |
T |
|
| Q |
121 |
gggagcagccaaggacaagcacaaaagcacaaagaatcattccaaatagtatgatgtagcgattgatcttgttttgtaaacggatcatggctaacttgat |
220 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||| |||||||||||||| |||||||||||||||| |||||| |
|
|
| T |
33638124 |
gggagcagccaaggacaagcacaaaagcacaaagaatcattcccaacagtatgatgtagcggttgatcttgttttgcaaacggatcatggctagcttgat |
33638223 |
T |
|
| Q |
221 |
ggcgagggacaagaaagtggtgaaaacaaaacaaaagagtgaccactttaatgggttttgttcgagagtaaaagtcatcaccgagcttacaacctctctg |
320 |
Q |
| |
|
||||||||| | |||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||| ||| ||||||||||||||||| |
|
|
| T |
33638224 |
ggcgagggagaggaaagtggtgaatacaaaacaaaagagtgaccactttaatggggtttgttcgagagtaaaagtcactaccaagcttacaacctctctg |
33638323 |
T |
|
| Q |
321 |
atgtagagagatagagccgaaaatattataaagaagatgttgacaatcatcatcatgtctaaggcctttatttgtttttctgagaaatccatagtttgtt |
420 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33638324 |
atgtagagagatagagccgtaaatattataaagaagatgttgacaatcatcatcatgtctaaggcctttatttgtttttctgagaaatccatagtttgtt |
33638423 |
T |
|
| Q |
421 |
gacggtcttttgcttgcacgaatagctgctcatgaaatcaataaacaaaagcaagaaaaatatcaaattcactaactagagtatacataggtatgcattt |
520 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33638424 |
gacggtcttttgcttgcacgaatagctgctcatgaaatcaataaacaaaagcaagaaaaatatcaaattcactaactagagtatacataggtatgcattt |
33638523 |
T |
|
| Q |
521 |
tgatttaatgtcaagagtcaagacccagaacaacaaaatagtgtcatctgatgcattgaaagctcaaaacatttccaatagttcatctcact |
612 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
33638524 |
tgatttaatgtcaagagtcaagacccagaacaacaaaatagtgtcatctgatgcattgaaagctcaaaacatttccaatagttcatatcact |
33638615 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University