View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1511_low_141 (Length: 258)

Name: NF1511_low_141
Description: NF1511
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1511_low_141
NF1511_low_141
[»] chr1 (5 HSPs)
chr1 (57-258)||(1589390-1589591)
chr1 (155-215)||(19610807-19610867)
chr1 (151-217)||(35804335-35804400)
chr1 (151-217)||(48050942-48051008)
chr1 (161-213)||(13412081-13412133)
[»] chr3 (4 HSPs)
chr3 (127-227)||(30443743-30443843)
chr3 (124-227)||(43753749-43753852)
chr3 (160-200)||(29388286-29388326)
chr3 (126-206)||(32089348-32089428)
[»] chr7 (2 HSPs)
chr7 (151-213)||(24097990-24098052)
chr7 (127-206)||(30774136-30774216)
[»] chr6 (1 HSPs)
chr6 (161-228)||(21873107-21873174)
[»] chr8 (7 HSPs)
chr8 (154-228)||(27567522-27567596)
chr8 (127-215)||(21484951-21485038)
chr8 (126-201)||(29642829-29642904)
chr8 (151-200)||(3938326-3938375)
chr8 (126-203)||(24585973-24586050)
chr8 (151-200)||(31740327-31740376)
chr8 (152-217)||(33012906-33012971)
[»] chr4 (3 HSPs)
chr4 (127-213)||(47678825-47678911)
chr4 (127-212)||(10048533-10048618)
chr4 (153-200)||(17268068-17268115)
[»] chr2 (1 HSPs)
chr2 (126-213)||(41824098-41824185)
[»] chr5 (1 HSPs)
chr5 (127-217)||(4042664-4042754)
[»] scaffold0006 (1 HSPs)
scaffold0006 (160-213)||(278596-278651)


Alignment Details
Target: chr1 (Bit Score: 170; Significance: 2e-91; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 57 - 258
Target Start/End: Original strand, 1589390 - 1589591
Alignment:
Q  57 tattattacatagctactatttcacaagtgagaaagttatgtgacaagaccataccactccttcggattctttttataagaaacatatgagtatacaaaa 156  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||| ||||||    
T  1589390 tattattacatagctactatttcacaagtgagaaagttatgtgacacgaccataccactccttcggattttttttataagaaacatatgagtaaacaaaa 1589489  T
Q  157 gttaatgtatttaatctatattatgaactaaatacatcaattttagttgatcaatttgtcttatgtaaaaaacgttgagggagtattatatagaaaagag 256  Q
    |||||||||||||||||||||||||||||||||| || || ||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||    
T  1589490 gttaatgtatttaatctatattatgaactaaatatattaactttagttgatcaatttgtcttttgtaaaaaacattgagggagtattatatagaaaagag 1589589  T
Q  257 at 258  Q
    ||    
T  1589590 at 1589591  T

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Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 155 - 215
Target Start/End: Complemental strand, 19610867 - 19610807
Alignment:
Q  155 aagttaatgtatttaatctatattatgaactaaatacatcaattttagttgatcaatttgt 215  Q
    ||||| ||||||||| || ||||||||||||||||||||||||||| ||||| | ||||||    
T  19610867 aagttgatgtatttagtccatattatgaactaaatacatcaatttttgttgacccatttgt 19610807  T

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Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 151 - 217
Target Start/End: Complemental strand, 35804400 - 35804335
Alignment:
Q  151 acaaaagttaatgtatttaatctatattatgaactaaatacatcaattttagttgatcaatttgtct 217  Q
    ||||||||||||||||||||| ||||||||| |  ||||||| |||||||| |||| ||||||||||    
T  35804400 acaaaagttaatgtatttaatttatattatggatcaaataca-caattttaattgaccaatttgtct 35804335  T

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Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 151 - 217
Target Start/End: Original strand, 48050942 - 48051008
Alignment:
Q  151 acaaaagttaatgtatttaatctatattatgaactaaatacatcaattttagttgatcaatttgtct 217  Q
    |||||||| |||||||||  || | ||||||||| ||||||||||| ||||||||| ||||||||||    
T  48050942 acaaaagtaaatgtatttggtccacattatgaaccaaatacatcaactttagttgaccaatttgtct 48051008  T

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Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 161 - 213
Target Start/End: Original strand, 13412081 - 13412133
Alignment:
Q  161 atgtatttaatctatattatgaactaaatacatcaattttagttgatcaattt 213  Q
    ||||||||| |||| ||||||||| |||||||||||||||| |||| ||||||    
T  13412081 atgtatttagtctagattatgaaccaaatacatcaattttaattgaccaattt 13412133  T

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Target: chr3 (Bit Score: 57; Significance: 7e-24; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 127 - 227
Target Start/End: Original strand, 30443743 - 30443843
Alignment:
Q  127 tttttataagaaacatatgagtatacaaaagttaatgtatttaatctatattatgaactaaatacatcaattttagttgatcaatttgtcttatgtaaaa 226  Q
    ||||||||||||||| ||| ||  ||||||||||||||||||  |||||||||||||| ||||||||||| ||||||||| ||||||||||  |||||||    
T  30443743 tttttataagaaacaaatgggtcaacaaaagttaatgtatttggtctatattatgaaccaaatacatcaactttagttgaccaatttgtctcttgtaaaa 30443842  T
Q  227 a 227  Q
    |    
T  30443843 a 30443843  T

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Target: chr3; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 124 - 227
Target Start/End: Original strand, 43753749 - 43753852
Alignment:
Q  124 ttctttttataagaaacatatgagtatacaaaagttaatgtatttaatctatattatgaactaaatacatcaattttagttgatcaatttgtcttatgta 223  Q
    |||| ||||||| ||||| ||||||  |||||||||||||||||| ||||| ||||||||| ||||||||||| ||| |||||| ||| |||||| | ||    
T  43753749 ttctatttataataaacaaatgagtcaacaaaagttaatgtatttgatctacattatgaaccaaatacatcaactttggttgataaatctgtcttttata 43753848  T
Q  224 aaaa 227  Q
    ||||    
T  43753849 aaaa 43753852  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 200
Target Start/End: Complemental strand, 29388326 - 29388286
Alignment:
Q  160 aatgtatttaatctatattatgaactaaatacatcaatttt 200  Q
    ||||||||||| ||||||| | |||||||||||||||||||    
T  29388326 aatgtatttaaactatattttaaactaaatacatcaatttt 29388286  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 126 - 206
Target Start/End: Complemental strand, 32089428 - 32089348
Alignment:
Q  126 ctttttataagaaacatatgagtatacaaaagttaatgtatttaatctatattatgaactaaatacatcaattttagttga 206  Q
    |||||||||| |||||||||  |  | ||||||||||||| |||||| ||||||| |  ||||||||| | ||||||||||    
T  32089428 ctttttataataaacatatggatcaataaaagttaatgtacttaatccatattataagttaaatacattagttttagttga 32089348  T

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Target: chr7 (Bit Score: 47; Significance: 6e-18; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 151 - 213
Target Start/End: Original strand, 24097990 - 24098052
Alignment:
Q  151 acaaaagttaatgtatttaatctatattatgaactaaatacatcaattttagttgatcaattt 213  Q
    |||||| ||||||||||||||||||||||||||  ||||||||||||||||||||| ||||||    
T  24097990 acaaaatttaatgtatttaatctatattatgaatcaaatacatcaattttagttgaccaattt 24098052  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 127 - 206
Target Start/End: Original strand, 30774136 - 30774216
Alignment:
Q  127 tttttataaga-aacatatgagtatacaaaagttaatgtatttaatctatattatgaactaaatacatcaattttagttga 206  Q
    ||||||||||| || | ||||||  ||||||||| ||||||||||||| ||| || || |||||||||||||||| |||||    
T  30774136 tttttataagataataaatgagtcaacaaaagttgatgtatttaatctttataataaattaaatacatcaattttggttga 30774216  T

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Target: chr6 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 161 - 228
Target Start/End: Original strand, 21873107 - 21873174
Alignment:
Q  161 atgtatttaatctatattatgaactaaatacatcaattttagttgatcaatttgtcttatgtaaaaaa 228  Q
    |||||||| |||||| ||||||| |||||| |||||||||||||||||||||||| || | |||||||    
T  21873107 atgtatttgatctatgttatgaattaaataaatcaattttagttgatcaatttgttttttataaaaaa 21873174  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 154 - 228
Target Start/End: Original strand, 27567522 - 27567596
Alignment:
Q  154 aaagttaatgtatttaatctatattatgaactaaatacatcaattttagttgatcaatttgtcttatgtaaaaaa 228  Q
    |||||| ||||||||  |||||||||||||| ||||| |||||||||||| ||||||||| |||| | |||||||    
T  27567522 aaagttgatgtatttggtctatattatgaaccaaatatatcaattttagtcgatcaatttatcttttataaaaaa 27567596  T

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Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 127 - 215
Target Start/End: Original strand, 21484951 - 21485038
Alignment:
Q  127 tttttataagaaacatatgagtatacaaaagttaatgtatttaatctatattatgaactaaatacatcaattttagttgatcaatttgt 215  Q
    ||||||||||||| | ||||| | | |||| || ||||||||| |||| ||||||||| ||||||||||||||| ||||| ||||||||    
T  21484951 tttttataagaaataaatgag-acaaaaaaattgatgtatttagtctacattatgaaccaaatacatcaattttggttgaccaatttgt 21485038  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 126 - 201
Target Start/End: Original strand, 29642829 - 29642904
Alignment:
Q  126 ctttttataagaaacatatgagtatacaaaagttaatgtatttaatctatattatgaactaaatacatcaatttta 201  Q
    |||||||||||| ||| ||  ||  |||||| ||||| |||||| |||||||||| ||||||||||||| ||||||    
T  29642829 ctttttataagagacaaattggtcaacaaaaattaatatatttagtctatattattaactaaatacatctatttta 29642904  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 151 - 200
Target Start/End: Original strand, 3938326 - 3938375
Alignment:
Q  151 acaaaagttaatgtatttaatctatattatgaactaaatacatcaatttt 200  Q
    ||||||||| ||||||||  ||| |||||||||| |||||||||||||||    
T  3938326 acaaaagttgatgtatttggtctttattatgaaccaaatacatcaatttt 3938375  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 126 - 203
Target Start/End: Original strand, 24585973 - 24586050
Alignment:
Q  126 ctttttataagaaacatatgagtatacaaaagttaatgtatttaatctatattatgaactaaatacatcaattttagt 203  Q
    |||||||||||||| | ||||||  ||||||||| || |||||  |||| || || ||||||||||||||| ||||||    
T  24585973 ctttttataagaaataaatgagtcaacaaaagttgatttatttggtctacatgataaactaaatacatcaactttagt 24586050  T

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Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 151 - 200
Target Start/End: Original strand, 31740327 - 31740376
Alignment:
Q  151 acaaaagttaatgtatttaatctatattatgaactaaatacatcaatttt 200  Q
    |||||| || ||||||||||||||||||| |||  |||||||||||||||    
T  31740327 acaaaacttgatgtatttaatctatattacgaatgaaatacatcaatttt 31740376  T

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Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 152 - 217
Target Start/End: Original strand, 33012906 - 33012971
Alignment:
Q  152 caaaagttaatgtatttaatctatattatgaactaaatacatcaattttagttgatcaatttgtct 217  Q
    ||||||||||| |||||  ||||| |||||||  ||||||||||| ||||||| ||| ||||||||    
T  33012906 caaaagttaatatatttggtctatgttatgaatcaaatacatcaactttagttaatccatttgtct 33012971  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 127 - 213
Target Start/End: Complemental strand, 47678911 - 47678825
Alignment:
Q  127 tttttataagaaacatatgagtatacaaaagttaatgtatttaatctatattatgaactaaatacatcaattttagttgatcaattt 213  Q
    ||||||||||||| | ||||||  ||||||  |||||||||| ||||| ||||| ||  ||||||||||||||||||||| ||||||    
T  47678911 tttttataagaaataaatgagtcaacaaaaactaatgtatttgatctacattataaatcaaatacatcaattttagttgaccaattt 47678825  T

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Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 127 - 212
Target Start/End: Complemental strand, 10048618 - 10048533
Alignment:
Q  127 tttttataagaaacatatgagtatacaaaagttaatgtatttaatctatattatgaactaaatacatcaattttagttgatcaatt 212  Q
    ||||||||||||||| |||| |  ||||||||| ||||||||  |||||||  ||||| |||||||| |||||||||||| |||||    
T  10048618 tttttataagaaacaaatgaatcaacaaaagttgatgtatttggtctatatcctgaaccaaatacattaattttagttgaccaatt 10048533  T

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Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 153 - 200
Target Start/End: Original strand, 17268068 - 17268115
Alignment:
Q  153 aaaagttaatgtatttaatctatattatgaactaaatacatcaatttt 200  Q
    |||||||||||||||| ||||||||||||||| | |||||||||||||    
T  17268068 aaaagttaatgtatttgatctatattatgaaccacatacatcaatttt 17268115  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 126 - 213
Target Start/End: Original strand, 41824098 - 41824185
Alignment:
Q  126 ctttttataagaaacatatgagtatacaaaagttaatgtatttaatctatattatgaactaaatacatcaattttagttgatcaattt 213  Q
    |||||||||||| ||  | ||||  |||||| ||||| ||||| |||   ||||||||||||||||||||||||||||||| ||||||    
T  41824098 ctttttataagacacgaacgagttaacaaaaattaatatatttgatcatcattatgaactaaatacatcaattttagttgaccaattt 41824185  T

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Target: chr5 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 127 - 217
Target Start/End: Original strand, 4042664 - 4042754
Alignment:
Q  127 tttttataagaaacatatgagtatacaaaagttaatgtatttaatctatattatgaactaaatacatcaattttagttgatcaatttgtct 217  Q
    ||||||||||||| | ||||||  | ||||||| ||| |||| ||||||||||| |||  |||||||||| | ||||| ||||||||||||    
T  4042664 tttttataagaaataaatgagtcaataaaagttgatgcatttgatctatattataaaccgaatacatcaactctagttaatcaatttgtct 4042754  T

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Target: scaffold0006 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 213
Target Start/End: Original strand, 278596 - 278651
Alignment:
Q  160 aatgtatttaatctat--attatgaactaaatacatcaattttagttgatcaattt 213  Q
    |||||||||| |||||  ||||||||| |||||||||||||||| |||| ||||||    
T  278596 aatgtatttagtctatctattatgaaccaaatacatcaattttaattgaccaattt 278651  T

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