View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1511_low_142 (Length: 257)
Name: NF1511_low_142
Description: NF1511
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1511_low_142 |
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Alignment Details
Target: chr1 (Bit Score: 156; Significance: 6e-83; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 53 - 243
Target Start/End: Complemental strand, 13771820 - 13771619
Alignment:
| Q |
53 |
acggttcaattttttgtagaaaatagaggtaacatggtaaatgattattagtacagaactttttgctaaaacattgaagaaatatactatagacaaaaca |
152 |
Q |
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| T |
13771820 |
acggttcaattttttgtagaaaatagaggtaacatggtaaatgattattagtacagaacttcttgctaaaacattgaagaaatatactatagacaaaaca |
13771721 |
T |
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| Q |
153 |
tagttcatgtaacatatggtaaatgcatatgtccattatcaatag-----------tactcatagccacaggtgcttaaaaaatgtcctaatagtagtat |
241 |
Q |
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| T |
13771720 |
tagttcatgtaacatatggtaaatgcatatgtccattatcaatagtactatagtagtactcatagccacaggtgcttacaaaatgtcctaatagtagtat |
13771621 |
T |
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| Q |
242 |
tt |
243 |
Q |
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|| |
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| T |
13771620 |
tt |
13771619 |
T |
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