View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1511_low_15 (Length: 598)
Name: NF1511_low_15
Description: NF1511
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1511_low_15 |
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Alignment Details
Target: chr1 (Bit Score: 517; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 517; E-Value: 0
Query Start/End: Original strand, 1 - 584
Target Start/End: Original strand, 37055035 - 37055618
Alignment:
| Q |
1 |
tgatggagaaggtgatggtgtgagaaactgatcagaatcagaatcagaatcaccattggatttagaaggtacccttttgtggaaactctttaaaccaagt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37055035 |
tgatggagaaggtgatggtgtgagaaactgatcagaatcagaatcagaatcaccattggatttagaaggtacccttttgtggaaactctttaaaccaagt |
37055134 |
T |
|
| Q |
101 |
aaagatctaaacttttcaactataaaaccttgtttctcttcattctcatctaaacctgagattttctgaacctgcttcttttcattttcttgttctttca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37055135 |
aaagatctaaacttttcaactataaaaccttgtttctcttcattctcatctaaacctgagattttctgaacctgcttcttttcattttcttgttctttca |
37055234 |
T |
|
| Q |
201 |
tgtaatagttatcttgtaaagtatgaacatggaagcttccagctgcattgattaaagcaccaacactcaaaatgtgagtcctttgtgatgatgataaagg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37055235 |
tgtaatagttatcttgtaaagtatgaacatggaagcttccagctgcattgattaaagcaccaacactcaaaatgtgagtcctttgtgatgatgataaagg |
37055334 |
T |
|
| Q |
301 |
aaccaagagtgtgataatgatgatgaagatcatggtaagaagctcagaaccacaactcattttctttttctttcttccaactaaaagttaatgcagcttt |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37055335 |
aaccaagagtgtgataatgatgatgaagatcatggtaagaagctcagaaccacaactcattttctttttctttcttccaactaaaagttaatgcagcttt |
37055434 |
T |
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| Q |
401 |
cctcttataaaagcttgtttccnnnnnnnnnnnnncatcnnnnnnnntgaatattttttcatttggttagtgctggtgaatgaaaataagatctgaaaca |
500 |
Q |
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|||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37055435 |
cctcttataaaagcttgtttcctttttgtttttttcataaaaaaaaatgaatattttttcatttggttagtgctggtgaatgaaaataagatctgaaaca |
37055534 |
T |
|
| Q |
501 |
gtactgtctttaatgctactccaagcaaagcagggaacccctgaacctttggcagttgtagttgtaccaggccttctttacttc |
584 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37055535 |
gtactgtctttaatgctactccaagcaaagcagggaacccctgaacctttggcagttgtagttgtaccaggccttctttacttc |
37055618 |
T |
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