View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1511_low_152 (Length: 250)
Name: NF1511_low_152
Description: NF1511
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1511_low_152 |
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Alignment Details
Target: chr7 (Bit Score: 145; Significance: 2e-76; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 91 - 239
Target Start/End: Complemental strand, 35107930 - 35107782
Alignment:
| Q |
91 |
aaaggtagataaggtcattaaactctaaacatgaagttcatgttttctctgacaggtactcacctcatgggagatggacaactgaggaaaacataaaatg |
190 |
Q |
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| T |
35107930 |
aaaggtagataaggtcattaaactctaaatatgaagttcatgttttctctgacaggtactcacctcatgggagatggacaactgaggaaaacataaaatg |
35107831 |
T |
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| Q |
191 |
ggaaaggctaagagtaccacctattgactcttcttcacatgttcttcat |
239 |
Q |
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| T |
35107830 |
ggaaaggctaagagtaccacctattgactcttcttcacatgttcttcat |
35107782 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 35108016 - 35107975
Alignment:
| Q |
1 |
ccttgtgttagtgacatgtgccggtgtcagacaccgaaatgc |
42 |
Q |
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| T |
35108016 |
ccttgtgttagtggcatgtgccggtgtcagacactgaaatgc |
35107975 |
T |
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