View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1511_low_159 (Length: 247)
Name: NF1511_low_159
Description: NF1511
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1511_low_159 |
 | |
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Alignment Details
Target: chr4 (Bit Score: 213; Significance: 1e-117; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 16 - 232
Target Start/End: Complemental strand, 8975978 - 8975762
Alignment:
| Q |
16 |
catgcaatcccctaagtttatcaatccaactcatgaatggaatataatcagaaacaaatatttctgcaagtaaagcttgaaactcatgcaacatttcatg |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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|
| T |
8975978 |
catgcaatcccctaagtttatcaatccaactcatgaatggaatataatcagaaacaaatatttctgcaagtaaagcttgaaactcatgcaacattccatg |
8975879 |
T |
|
| Q |
116 |
aaacctacttctttcagttccttcatcctcatagcttctcccaaaagcaatcctacaaattatagtacttgatagcgaaatcaataactcactcaaattt |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8975878 |
aaacctacttctttcagttccttcatcctcatagcttctcccaaaagcaatcctacaaattatagtacttgatagcgaaatcaataactcactcaaattt |
8975779 |
T |
|
| Q |
216 |
gtaacacttgaagaatc |
232 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
8975778 |
gtaacacttgaagaatc |
8975762 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 16 - 230
Target Start/End: Complemental strand, 9027730 - 9027516
Alignment:
| Q |
16 |
catgcaatcccctaagtttatcaatccaactcatgaatggaatataatcagaaacaaatatttctgcaagtaaagcttgaaactcatgcaacatttcatg |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
9027730 |
catgcaatcccctaagtttatcaatccaactcatgaagggaatataatcagaaacaaatatttctgcaagtaaagcttgaaactcatgcaacattccatg |
9027631 |
T |
|
| Q |
116 |
aaacctacttctttcagttccttcatcctcatagcttctcccaaaagcaatcctacaaattatagtacttgatagcgaaatcaataactcactcaaattt |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
9027630 |
aaacctacttctttcagttccttcatcctcatagcttctcccaaaagcaatcctacaaattatagtacttgatagcgaaatcaataactcactcaaattt |
9027531 |
T |
|
| Q |
216 |
gtaacacttgaagaa |
230 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
9027530 |
gtaacacttgaagaa |
9027516 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 16 - 230
Target Start/End: Original strand, 9002133 - 9002347
Alignment:
| Q |
16 |
catgcaatcccctaagtttatcaatccaactcatgaatggaatataatcagaaacaaatatttctgcaagtaaagcttgaaactcatgcaacatttcatg |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||| ||||||| |||||| | || |
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|
| T |
9002133 |
catgcaatcccctaagtttatcaatccaactcatgaatggaatataatcagaaacaaatatttctgccagcaaagcttgacactcatgaaacattccttg |
9002232 |
T |
|
| Q |
116 |
aaacctacttctttcagttccttcatcctcatagcttctcccaaaagcaatcctacaaattatagtacttgatagcgaaatcaataactcactcaaattt |
215 |
Q |
| |
|
|||||||||||| |||||||||||||| |||||||||||||||||| ||||||| |||||||| |||||||| || || ||||||| |||||||| |||| |
|
|
| T |
9002233 |
aaacctacttctctcagttccttcatcttcatagcttctcccaaaaacaatcctgcaaattatcgtacttgaaagagatatcaatatctcactcatattt |
9002332 |
T |
|
| Q |
216 |
gtaacacttgaagaa |
230 |
Q |
| |
|
| ||||||||||||| |
|
|
| T |
9002333 |
gaaacacttgaagaa |
9002347 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 16 - 232
Target Start/End: Original strand, 8972071 - 8972287
Alignment:
| Q |
16 |
catgcaatcccctaagtttatcaatccaactcatgaatggaatataatcagaaacaaatatttctgcaagtaaagcttgaaactcatgcaacatttcatg |
115 |
Q |
| |
|
|||||||||| ||||| ||||||| ||||| ||| |||||||||||||| ||||||| | ||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
8972071 |
catgcaatcctctaagcttatcaagccaacccatatatggaatataatcacaaacaaaaaattctgcaagcaaagcttgaaactcatgcaacatttcatg |
8972170 |
T |
|
| Q |
116 |
aaacctacttctttcagttccttcatcctcatagcttctcccaaaagcaatcctacaaattatagtacttgatagcgaaatcaataactcactcaaattt |
215 |
Q |
| |
|
||| |||||| | |||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||| | ||||||||||||| |
|
|
| T |
8972171 |
aaatctacttttctcagttccatcattctcatagcttctcccaaaagcaatcctacaaattatagtacttgatagagaaatcaacacctcactcaaattt |
8972270 |
T |
|
| Q |
216 |
gtaacacttgaagaatc |
232 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
8972271 |
gtaacacttgaagaatc |
8972287 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 16 - 232
Target Start/End: Complemental strand, 8952889 - 8952673
Alignment:
| Q |
16 |
catgcaatcccctaagtttatcaatccaactcatgaatggaatataatcagaaacaaatatttctgcaagtaaagcttgaaactcatgcaacatttcatg |
115 |
Q |
| |
|
|||||||||| || || ||||||||||| | | ||||||||||||||||||||| ||| || |||||| |||||||||||||||||||||| | |||| |
|
|
| T |
8952889 |
catgcaatcctctgagcttatcaatccatcccgtgaatggaatataatcagaaaaaaagcttgttgcaagcaaagcttgaaactcatgcaacaatccatg |
8952790 |
T |
|
| Q |
116 |
aaacctacttctttcagttccttcatcctcatagcttctcccaaaagcaatcctacaaattatagtacttgatagcgaaatcaataactcactcaaattt |
215 |
Q |
| |
|
||||||||| | ||| || | ||||| ||||||||| ||||||||||||| |||||||||||||||||||| || |||||||||||||||||||||||| |
|
|
| T |
8952789 |
aaacctactcttctcaatttcatcatcttcatagcttttcccaaaagcaattctacaaattatagtacttgagagtgaaatcaataactcactcaaattt |
8952690 |
T |
|
| Q |
216 |
gtaacacttgaagaatc |
232 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
8952689 |
gtaacacttgaagaatc |
8952673 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 16 - 230
Target Start/End: Original strand, 8930143 - 8930357
Alignment:
| Q |
16 |
catgcaatcccctaagtttatcaatccaactcatgaatggaatataatcagaaacaaatatttctgcaagtaaagcttgaaactcatgcaacatttcatg |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| | ||| | || || | |||||||||||||||| |||| |
|
|
| T |
8930143 |
catgcaatcccctaagtttatcaatccaactcatgaatgtaatataatcagaaacaaagaaagctgtcatcaaggcctcaaactcatgcaacattccatg |
8930242 |
T |
|
| Q |
116 |
aaacctacttctttcagttccttcatcctcatagcttctcccaaaagcaatcctacaaattatagtacttgatagcgaaatcaataactcactcaaattt |
215 |
Q |
| |
|
|| |||| || ||| | |||| ||||| || || |||||||||||||||||||||| || ||||| |||| ||| |||||| ||||||||||||| |
|
|
| T |
8930243 |
gaatttactcctctcaatcccttgttcctcgtacctcttcccaaaagcaatcctacaaatcattgtactatatagagaagtcaatatctcactcaaattt |
8930342 |
T |
|
| Q |
216 |
gtaacacttgaagaa |
230 |
Q |
| |
|
|||||| |||||||| |
|
|
| T |
8930343 |
gtaacatttgaagaa |
8930357 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 30 - 230
Target Start/End: Original strand, 8916314 - 8916517
Alignment:
| Q |
30 |
agtttatcaatccaactcatgaatggaatataatcagaaacaaatatttctgcaagtaaagcttgaaactcatgcaacatttcatgaaacctact--tct |
127 |
Q |
| |
|
|||||||||||||||| | | ||||||||||||||||||| ||| | ||| | | || | |||||||||||||||| |||| || |||| ||| |
|
|
| T |
8916314 |
agtttatcaatccaacccgtaaatggaatataatcagaaataaagagagctgtcaacatggcctcaaactcatgcaacattccatggaatttactcctct |
8916413 |
T |
|
| Q |
128 |
t-tcagttccttcatcctcatagcttctcccaaaagcaatcctacaaattatagtacttgatagcgaaatcaataactcactcaaatttgtaacacttga |
226 |
Q |
| |
|
| | |||||||||||| ||||| || || || |||||||||||||||||||| ||||| || || ||| |||||| ||||||||||||||||||| |||| |
|
|
| T |
8916414 |
tattagttccttcatcttcataactcctaccgaaagcaatcctacaaattattgtactagagagagaagtcaatatctcactcaaatttgtaacaattga |
8916513 |
T |
|
| Q |
227 |
agaa |
230 |
Q |
| |
|
|||| |
|
|
| T |
8916514 |
agaa |
8916517 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 131 - 230
Target Start/End: Original strand, 8905574 - 8905673
Alignment:
| Q |
131 |
agttccttcatcctcatagcttctcccaaaagcaatcctacaaattatagtacttgatagcgaaatcaataactcactcaaatttgtaacacttgaagaa |
230 |
Q |
| |
|
|||||||||||| ||||| || || || |||||||||||||||||||| ||||| || || ||| |||||| ||||||||||||||||||| |||||||| |
|
|
| T |
8905574 |
agttccttcatcttcataactcctaccgaaagcaatcctacaaattattgtactagagagagaagtcaatatctcactcaaatttgtaacatttgaagaa |
8905673 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 63; Significance: 2e-27; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 16 - 230
Target Start/End: Original strand, 9401148 - 9401362
Alignment:
| Q |
16 |
catgcaatcccctaagtttatcaatccaactcatgaatggaatataatcagaaacaaatatttctgcaagtaaagcttgaaactcatgcaacatttcatg |
115 |
Q |
| |
|
||||||| || || |||||||||||||||| ||| ||||||||||||||||||||||| | ||| | | || | |||||||||||||||| |||| |
|
|
| T |
9401148 |
catgcaaccctcttagtttatcaatccaacccataaatggaatataatcagaaacaaagaaagctgtcaacatggcctcaaactcatgcaacattccatg |
9401247 |
T |
|
| Q |
116 |
aaacctacttctttcagttccttcatcctcatagcttctcccaaaagcaatcctacaaattatagtacttgatagcgaaatcaataactcactcaaattt |
215 |
Q |
| |
|
|| |||| || || ||||||||| ||||| || ||||||||||||| |||||||||||| ||||||| || ||||| ||||| |||||||||||| |
|
|
| T |
9401248 |
gaatttactactctctagtccttcatcttcatacctcctcccaaaagcaaccctacaaattattttacttgagagagaaattaataattcactcaaattt |
9401347 |
T |
|
| Q |
216 |
gtaacacttgaagaa |
230 |
Q |
| |
|
|||||| ||||||| |
|
|
| T |
9401348 |
gtaacaactgaagaa |
9401362 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 30 - 230
Target Start/End: Original strand, 20075510 - 20075710
Alignment:
| Q |
30 |
agtttatcaatccaactcatgaatggaatataatcagaaacaaatatttctgcaagtaaagcttgaaactcatgcaacatttcatgaaacctacttcttt |
129 |
Q |
| |
|
|||||||||||||||| | ||||||||||||||||||||| ||| | ||| | | || | |||||||||||||||| | || || |||| || | |
|
|
| T |
20075510 |
agtttatcaatccaacccgtgaatggaatataatcagaaataaagaaagctgttatcatggcctcaaactcatgcaacattccctggaatttactcctct |
20075609 |
T |
|
| Q |
130 |
cagttccttcatcctcatagcttctcccaaaagcaatcctacaaattatagtacttgatagcgaaatcaataactcactcaaatttgtaacacttgaaga |
229 |
Q |
| |
|
||||||||||||||| || || || || |||||||||||||||||||| ||||| || || ||| | |||| ||||||||||||||||||| ||||||| |
|
|
| T |
20075610 |
tagttccttcatcctcgtacctcctaccgaaagcaatcctacaaattattgtactggaaagagaagttaatatctcactcaaatttgtaacaattgaaga |
20075709 |
T |
|
| Q |
230 |
a |
230 |
Q |
| |
|
| |
|
|
| T |
20075710 |
a |
20075710 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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