View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1511_low_16 (Length: 597)

Name: NF1511_low_16
Description: NF1511
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1511_low_16
NF1511_low_16
[»] chr1 (6 HSPs)
chr1 (1-541)||(43084630-43085170)
chr1 (99-225)||(43046309-43046434)
chr1 (358-446)||(43046669-43046755)
chr1 (42-86)||(43076339-43076383)
chr1 (31-81)||(3301432-3301482)
chr1 (380-449)||(43085389-43085456)
[»] chr8 (3 HSPs)
chr8 (115-217)||(1895540-1895642)
chr8 (141-212)||(33306144-33306215)
chr8 (141-210)||(41139238-41139307)
[»] chr4 (2 HSPs)
chr4 (141-212)||(25371638-25371709)
chr4 (141-210)||(33870914-33870983)
[»] chr7 (3 HSPs)
chr7 (141-210)||(22365596-22365665)
chr7 (141-210)||(22361910-22361979)
chr7 (150-210)||(11474873-11474933)
[»] chr5 (2 HSPs)
chr5 (141-210)||(2639503-2639572)
chr5 (150-211)||(9749223-9749284)
[»] chr2 (1 HSPs)
chr2 (141-210)||(42358124-42358193)
[»] scaffold0128 (1 HSPs)
scaffold0128 (141-207)||(45531-45597)


Alignment Details
Target: chr1 (Bit Score: 509; Significance: 0; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 509; E-Value: 0
Query Start/End: Original strand, 1 - 541
Target Start/End: Original strand, 43084630 - 43085170
Alignment:
Q  1 ggaatactgctatcaacaacacactatcaaaaaagatctaacaattcaacaaagaaaacaatacataagtatgaacccaaatacaatgacagcaagtctt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  43084630 ggaatactgctatcaacaacacactatcaaaaaagatctaacaattcaacaaagaaaacaatacataagtatgaacccaaagacaatgacagcaagtctt 43084729  T
Q  101 atcccactaagtggacttggcaacaaaatgaaatgaattaccctcacgtaggatcgaactacggaccttcagttgaaaagactgatgctctaccactgag 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43084730 atcccactaagtggacttggcaacaaaatgaaatgaattaccctcacgtaggatcgaactacggaccttcagttgaaaagactgatgctctaccactgag 43084829  T
Q  201 ctataagggcaaattgtctatgaactcagaccaaaaatgaaatacataatcaacaatatgacaataattaacatcagcatgctaaggaaaaagggggctc 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  43084830 ctataagggcaaattgtctatgaactcagaccaaaaatgaaatacataatcaacaatatgacaataattaacatcagcatgataaggaaaaagggggctc 43084929  T
Q  301 caccactaggttaaaagggctacgttgagtcagttcctgaacaaggaacttgtgtgtattctaatcttatttctattagtcagacatgcaatcagatatt 400  Q
    ||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43084930 caccactgggttaaaagggctacattgagtcagttcctgaacaaggaacttgtgtgtattctaatcttatttctattagtcagacatgcaatcagatatt 43085029  T
Q  401 tcagcagataaaacaggttaaacaaacctaagtaatcaacaataaaatagataaataaaatacaagaacaaagttctgtcaccatgtcaataacagaata 500  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||    
T  43085030 tcagcagataaaacaggttaaacaaacctaagtaatcaacaataaaatagataaatgaaatacaagaacaacgttctgtcaccatgtcaataacagaata 43085129  T
Q  501 tatactgggcatgaaataagatgtttctgcagaatcaaaaa 541  Q
    |||| ||||||||||||||||||||||||||||||| ||||    
T  43085130 tatagtgggcatgaaataagatgtttctgcagaatccaaaa 43085170  T

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Target: chr1; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 99 - 225
Target Start/End: Original strand, 43046309 - 43046434
Alignment:
Q  99 ttatcccactaagtggacttggcaacaaaatgaaatgaattaccctcacgtaggatcgaactacggaccttcagttgaaaagactgatgctctaccactg 198  Q
    ||||||||||||||||  |||| ||| | |||||||||||| |||||||| ||||||||||||||||||||||||| | |||||||||||||||||||||    
T  43046309 ttatcccactaagtgggtttgg-aactatatgaaatgaattgccctcacgcaggatcgaactacggaccttcagtttacaagactgatgctctaccactg 43046407  T
Q  199 agctataagggcaaattgtctatgaac 225  Q
    |||||||||||||| |||| |||||||    
T  43046408 agctataagggcaagttgtatatgaac 43046434  T

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Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 358 - 446
Target Start/End: Original strand, 43046669 - 43046755
Alignment:
Q  358 attctaatcttatttctattagtcagacatgcaatcagatatttcagcagataaaacaggttaaacaaacctaagtaatcaacaataaa 446  Q
    |||||||||||||  |||||| |||| |||||||||||||  ||||||||||| ||||||| |||||||| | ||||||||| ||||||    
T  43046669 attctaatcttat--ctattaatcaggcatgcaatcagattcttcagcagatataacaggtaaaacaaacttcagtaatcaagaataaa 43046755  T

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Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 42 - 86
Target Start/End: Complemental strand, 43076383 - 43076339
Alignment:
Q  42 caattcaacaaagaaaacaatacataagtatgaacccaaatacaa 86  Q
    |||||||||||||||||||||||||||||||||| ||||| ||||    
T  43076383 caattcaacaaagaaaacaatacataagtatgaatccaaagacaa 43076339  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 31 - 81
Target Start/End: Original strand, 3301432 - 3301482
Alignment:
Q  31 aaaagatctaacaattcaacaaagaaaacaatacataagtatgaacccaaa 81  Q
    |||||||||  |||||||||||||| |||||| ||||||||||| ||||||    
T  3301432 aaaagatctgccaattcaacaaagagaacaatgcataagtatgatcccaaa 3301482  T

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Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 380 - 449
Target Start/End: Original strand, 43085389 - 43085456
Alignment:
Q  380 tcagacatgcaatcagatatttcagcagataaaacaggttaaacaaacctaagtaatcaacaataaaata 449  Q
    |||| ||||||||||||| |||||||||||||||||| | ||| |||||  ||| ||||||| |||||||    
T  43085389 tcaggcatgcaatcagatttttcagcagataaaacagataaaataaacc--agtgatcaacattaaaata 43085456  T

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Target: chr8 (Bit Score: 67; Significance: 2e-29; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 115 - 217
Target Start/End: Complemental strand, 1895642 - 1895540
Alignment:
Q  115 acttggcaacaaaatgaaatgaattaccctcacgtaggatcgaactacggaccttcagttgaaaagactgatgctctaccactgagctataagggcaaat 214  Q
    |||||||||||||| ||||| |||| |||||||| ||||||||||| ||||||||||||| | |||||||| |||||||||||||||||||||||||| |    
T  1895642 acttggcaacaaaaagaaatcaattgccctcacgcaggatcgaactgcggaccttcagtttacaagactgacgctctaccactgagctataagggcaact 1895543  T
Q  215 tgt 217  Q
    |||    
T  1895542 tgt 1895540  T

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Target: chr8; HSP #2
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 141 - 212
Target Start/End: Complemental strand, 33306215 - 33306144
Alignment:
Q  141 ccctcacgtaggatcgaactacggaccttcagttgaaaagactgatgctctaccactgagctataagggcaa 212  Q
    |||||||| ||||||||||||||||||||||||| | |||||||| ||||||||||||||||||||||||||    
T  33306215 ccctcacgcaggatcgaactacggaccttcagtttacaagactgacgctctaccactgagctataagggcaa 33306144  T

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Target: chr8; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 141 - 210
Target Start/End: Original strand, 41139238 - 41139307
Alignment:
Q  141 ccctcacgtaggatcgaactacggaccttcagttgaaaagactgatgctctaccactgagctataagggc 210  Q
    |||||||| |||||||||||| |||||||||||| | |||||||| ||||||||||||||||||||||||    
T  41139238 ccctcacgcaggatcgaactatggaccttcagtttacaagactgacgctctaccactgagctataagggc 41139307  T

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Target: chr4 (Bit Score: 56; Significance: 6e-23; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 141 - 212
Target Start/End: Complemental strand, 25371709 - 25371638
Alignment:
Q  141 ccctcacgtaggatcgaactacggaccttcagttgaaaagactgatgctctaccactgagctataagggcaa 212  Q
    |||||||| ||||||||||||||||||||||||| | |||||||| ||||||||||||||||||||||||||    
T  25371709 ccctcacgcaggatcgaactacggaccttcagtttacaagactgacgctctaccactgagctataagggcaa 25371638  T

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Target: chr4; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 141 - 210
Target Start/End: Complemental strand, 33870983 - 33870914
Alignment:
Q  141 ccctcacgtaggatcgaactacggaccttcagttgaaaagactgatgctctaccactgagctataagggc 210  Q
    |||||||| ||||||||||||||||||||||||| | |||||||| ||||||||||||||||||||||||    
T  33870983 ccctcacgcaggatcgaactacggaccttcagtttacaagactgacgctctaccactgagctataagggc 33870914  T

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Target: chr7 (Bit Score: 54; Significance: 1e-21; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 141 - 210
Target Start/End: Original strand, 22365596 - 22365665
Alignment:
Q  141 ccctcacgtaggatcgaactacggaccttcagttgaaaagactgatgctctaccactgagctataagggc 210  Q
    |||||||| ||||||||||||||||||||||||| | |||||||| ||||||||||||||||||||||||    
T  22365596 ccctcacgcaggatcgaactacggaccttcagtttacaagactgacgctctaccactgagctataagggc 22365665  T

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Target: chr7; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 141 - 210
Target Start/End: Original strand, 22361910 - 22361979
Alignment:
Q  141 ccctcacgtaggatcgaactacggaccttcagttgaaaagactgatgctctaccactgagctataagggc 210  Q
    |||||||| ||||||||||||| ||||||||||| | |||||||| ||||||||||||||||||||||||    
T  22361910 ccctcacgcaggatcgaactacagaccttcagtttacaagactgacgctctaccactgagctataagggc 22361979  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 150 - 210
Target Start/End: Original strand, 11474873 - 11474933
Alignment:
Q  150 aggatcgaactacggaccttcagttgaaaagactgatgctctaccactgagctataagggc 210  Q
    ||||||||||||| ||||| ||||| | |||||||  ||||||||||| ||||||| ||||    
T  11474873 aggatcgaactacagacctccagtttacaagactggcgctctaccactaagctataggggc 11474933  T

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Target: chr5 (Bit Score: 46; Significance: 6e-17; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 141 - 210
Target Start/End: Complemental strand, 2639572 - 2639503
Alignment:
Q  141 ccctcacgtaggatcgaactacggaccttcagttgaaaagactgatgctctaccactgagctataagggc 210  Q
    |||||||| ||||||||||||||||||| ||||| | |||||||  ||||||||||||||||||||||||    
T  2639572 ccctcacgcaggatcgaactacggacctccagtttacaagactggcgctctaccactgagctataagggc 2639503  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 150 - 211
Target Start/End: Original strand, 9749223 - 9749284
Alignment:
Q  150 aggatcgaactacggaccttcagttgaaaagactgatgctctaccactgagctataagggca 211  Q
    ||||||||||||| ||||| ||||| | |||||||  ||||||||||||||||||| |||||    
T  9749223 aggatcgaactacagacctccagtttacaagactggcgctctaccactgagctataggggca 9749284  T

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Target: chr2 (Bit Score: 46; Significance: 6e-17; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 141 - 210
Target Start/End: Original strand, 42358124 - 42358193
Alignment:
Q  141 ccctcacgtaggatcgaactacggaccttcagttgaaaagactgatgctctaccactgagctataagggc 210  Q
    |||||||| ||||||||||||||||||| ||||| | |||||||  ||||||||||||||||||||||||    
T  42358124 ccctcacgcaggatcgaactacggacctccagtttacaagactggcgctctaccactgagctataagggc 42358193  T

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Target: scaffold0128 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 1)
Name: scaffold0128
Description:

Target: scaffold0128; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 141 - 207
Target Start/End: Original strand, 45531 - 45597
Alignment:
Q  141 ccctcacgtaggatcgaactacggaccttcagttgaaaagactgatgctctaccactgagctataag 207  Q
    |||||||| ||||| ||||||||||||||||||| | | |||||  |||||||||||||||||||||    
T  45531 ccctcacgaaggattgaactacggaccttcagtttacaggactggcgctctaccactgagctataag 45597  T

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