View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1511_low_163 (Length: 244)
Name: NF1511_low_163
Description: NF1511
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1511_low_163 |
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Alignment Details
Target: chr2 (Bit Score: 162; Significance: 1e-86; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 8 - 228
Target Start/End: Complemental strand, 3370951 - 3370730
Alignment:
| Q |
8 |
cgaagaaaatagattttgataccctt-aaatttaaatattgagttcgaaattaaactattcaatcttgatacaacgaacgaccatcaattagtttcttga |
106 |
Q |
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| T |
3370951 |
cgaaaaaaatagattttgattttctttaaatctaaatattgagttagaatttaaactatttaattttgatccaacgaacgactaccatttagtttcttga |
3370852 |
T |
|
| Q |
107 |
atgtatgacattcggaccacatgcaatccatatttgtgtacatacaagttccttctaattatttatttcatagtttgataaacaattaaaaggaaaattt |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3370851 |
atgtatgacattcggaccacatgcaatccatatttgtgtacatacaagttccttctaattatttatttcatagtttgataaacaattaaaaggaaaattt |
3370752 |
T |
|
| Q |
207 |
atatttgtagggtatcatatct |
228 |
Q |
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|||||||||||||||||||||| |
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| T |
3370751 |
atatttgtagggtatcatatct |
3370730 |
T |
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