View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1511_low_165 (Length: 241)
Name: NF1511_low_165
Description: NF1511
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1511_low_165 |
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Alignment Details
Target: chr2 (Bit Score: 96; Significance: 3e-47; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 7 - 228
Target Start/End: Original strand, 8009135 - 8009357
Alignment:
| Q |
7 |
gtccgacatgtcttagataagattacatcaaatgaaagaaattagataaatcataatcaagatttgaattttctttagggagtaaaatcaacttaagagc |
106 |
Q |
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| T |
8009135 |
gtccgacatgtcttaaataagattacatcaaataaaagaaattagataaatcacaatcaagattcaaatttttgttagggagtaaaatcaacttaagagc |
8009234 |
T |
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| Q |
107 |
gtgtgccnnnnnnnnnnnnnnnntcaacttaagagtgagtgatatttaaaacaaa-nnnnnnnnncggtataagtgtgagagccttatgttgatcatttt |
205 |
Q |
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|||| || |||||||||||||||||||||||||||||||| ||| |||| ||||||||||||||||||||||||| |
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| T |
8009235 |
gtgtaccaaaacaaaaaataaaatcaacttaagagtgagtgatatttaaaacaaatttttttttttggtttaagcgtgagagccttatgttgatcatttt |
8009334 |
T |
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| Q |
206 |
tctttttagggaatgtagatcat |
228 |
Q |
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||||||||||||||||||||||| |
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| T |
8009335 |
tctttttagggaatgtagatcat |
8009357 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 192 - 228
Target Start/End: Original strand, 8009347 - 8009383
Alignment:
| Q |
192 |
atgttgatcatttttctttttagggaatgtagatcat |
228 |
Q |
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|||| |||||||||||||||||||||||||||||||| |
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| T |
8009347 |
atgtagatcatttttctttttagggaatgtagatcat |
8009383 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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