View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1511_low_166 (Length: 240)
Name: NF1511_low_166
Description: NF1511
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1511_low_166 |
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| [»] chr6 (3 HSPs) |
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| [»] chr4 (1 HSPs) |
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| [»] chr1 (3 HSPs) |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 204; Significance: 1e-111; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 18 - 240
Target Start/End: Original strand, 1940503 - 1940723
Alignment:
| Q |
18 |
agattggactgtggagcttcttaaaactgacactttgcttggaggcatgcgcgccaattggtaagaacacatgcggtgatcttcactgtcgttattactt |
117 |
Q |
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| T |
1940503 |
agattggactgtggagcttcttaaaactgacactttgcttggaggcatgcgcgccaattggtaagaacacatgcagtgattttcactgtcgttattactt |
1940602 |
T |
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| Q |
118 |
catatatacgtctcattacgggtcattgcaaaactatgtatttaatataaaatgcacaagttttaatattaacttgttagttttgatttcttaatttatg |
217 |
Q |
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| T |
1940603 |
catat--acgtctcattacgggtcattgcaaaactatgtatttaatataaaatgcacaagttttaatattaacttgttagttttgatttcttaatttatg |
1940700 |
T |
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| Q |
218 |
caagtttgcacatgatagaaaaa |
240 |
Q |
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| T |
1940701 |
caagtttgcacatgatagaaaaa |
1940723 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 18 - 85
Target Start/End: Original strand, 1926393 - 1926460
Alignment:
| Q |
18 |
agattggactgtggagcttcttaaaactgacactttgcttggaggcatgcgcgccaattggtaagaac |
85 |
Q |
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| T |
1926393 |
agattggactgtggagctccttaaaactgacactttgcttgctggcatgcgtgctaattggtatgaac |
1926460 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 18 - 83
Target Start/End: Original strand, 1955147 - 1955212
Alignment:
| Q |
18 |
agattggactgtggagcttcttaaaactgacactttgcttggaggcatgcgcgccaattggtaaga |
83 |
Q |
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| T |
1955147 |
agattggactgtggagctccttaaaaccgacactttgcttgctggcatgcgtgctaattggtaaga |
1955212 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 152 - 240
Target Start/End: Complemental strand, 34671644 - 34671556
Alignment:
| Q |
152 |
tatgtatttaatataaaatgcacaagttttaatattaacttgttagttttgatttcttaatttatgcaagtttgcacatgatagaaaaa |
240 |
Q |
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| T |
34671644 |
tatgtatttaatataaagtgtataagtttcaacataaacttatcacttttgccttcttattttatgcaagtttgcacatgatagaaaaa |
34671556 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.00000000008; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 162 - 240
Target Start/End: Complemental strand, 41676639 - 41676561
Alignment:
| Q |
162 |
atataaaatgcacaagttttaatattaacttgttagttttgatttcttaatttatgcaagtttgcacatgatagaaaaa |
240 |
Q |
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| T |
41676639 |
atataaaatgcacaagttttaatacaaaattattattttgaatttcttaacatgtgcaaatttgcacatgatagaaaaa |
41676561 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 147 - 240
Target Start/End: Complemental strand, 42457005 - 42456912
Alignment:
| Q |
147 |
aaaactatgtatttaatataaaatgcacaagttttaatattaacttgttagttttgatttcttaatttatgcaagtttgcacatgatagaaaaa |
240 |
Q |
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| T |
42457005 |
aaaattatttatttaatataaaatgcacaaattctaatataaacttactatttttaacttcttatactatgtaagtttgcgcatgatagaaaaa |
42456912 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 147 - 183
Target Start/End: Complemental strand, 12947648 - 12947612
Alignment:
| Q |
147 |
aaaactatgtatttaatataaaatgcacaagttttaa |
183 |
Q |
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| T |
12947648 |
aaaactacctatttaatataaaatgcacaagttttaa |
12947612 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 156 - 233
Target Start/End: Complemental strand, 6659675 - 6659599
Alignment:
| Q |
156 |
tatttaatataaaatgcacaagttttaatattaacttgttagttttgatttcttaatttatgcaagtttgcacatgat |
233 |
Q |
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| T |
6659675 |
tatttaatataaaatacacaagttttaagataaatttatta-ttttgacttcttataatatgcaagtttgcacatgat |
6659599 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 156 - 233
Target Start/End: Complemental strand, 6740077 - 6740001
Alignment:
| Q |
156 |
tatttaatataaaatgcacaagttttaatattaacttgttagttttgatttcttaatttatgcaagtttgcacatgat |
233 |
Q |
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| T |
6740077 |
tatttaatataaaatacacaagttttaagataaatttatta-ttttgacttcttataatatgcaagtttgcacatgat |
6740001 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 203 - 240
Target Start/End: Original strand, 26834701 - 26834738
Alignment:
| Q |
203 |
atttcttaatttatgcaagtttgcacatgatagaaaaa |
240 |
Q |
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| T |
26834701 |
atttcttaatatatgcaaatttgcacatgatagaaaaa |
26834738 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 147 - 240
Target Start/End: Complemental strand, 48517572 - 48517479
Alignment:
| Q |
147 |
aaaactatgtatttaatataaaatgcacaagttttaatattaacttgttagttttgatttcttaatttatgcaagtttgcacatgatagaaaaa |
240 |
Q |
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| T |
48517572 |
aaaattatatatttaatataaaatgtataagtttgaagataaatttactacttttaactttttaatttattcaagtttgcacatgatacaaaaa |
48517479 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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