View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1511_low_167 (Length: 240)
Name: NF1511_low_167
Description: NF1511
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1511_low_167 |
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Alignment Details
Target: chr3 (Bit Score: 172; Significance: 1e-92; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 50306188 - 50306415
Alignment:
| Q |
1 |
aattgtttttaataattggttccataaaaaa--catgcttcttaattgcaacacgtgaagaattggtttgaatctttaattttaaatttttggatannnn |
98 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
50306188 |
aattgtttttaataattggttccataaaaaaaacatgcttcctaattgcaacacgtgaagaattggtttgaatctttaattttaaatttttgggtatttt |
50306287 |
T |
|
| Q |
99 |
nnnaaaaacaacatgatgaagatgaaaatggattgtagtttcatggtggatgatatgctagtgttgatggttcatggtctctgatatggctggtggtggt |
198 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||| |||| |
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|
| T |
50306288 |
ttgaaaaacaacatggtgaagatgaaaatggattgtagtttcatggtggatgagatgctagtgttgatggttcatggtctctgatgtggctggtgatggt |
50306387 |
T |
|
| Q |
199 |
gggtgagtggaggtatggaggagagaga |
226 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
50306388 |
gggtgagtggaggtatggaggagagaga |
50306415 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 172; Significance: 1e-92; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 3788818 - 3788591
Alignment:
| Q |
1 |
aattgtttttaataattggttccataaaaaa--catgcttcttaattgcaacacgtgaagaattggtttgaatctttaattttaaatttttggatannnn |
98 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
3788818 |
aattgtttttaataattggttccataaaaaaaacatgcttcctaattgcaacacgtgaagaattggtttgaatctttaattttaaatttttgggtatttt |
3788719 |
T |
|
| Q |
99 |
nnnaaaaacaacatgatgaagatgaaaatggattgtagtttcatggtggatgatatgctagtgttgatggttcatggtctctgatatggctggtggtggt |
198 |
Q |
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|
|||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||| |||| |
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|
| T |
3788718 |
ttgaaaaacaacatggtgaagatgaaaatggattgtagtttcatggtggatgagatgctagtgttgatggttcatggtctctgatgtggctggtgatggt |
3788619 |
T |
|
| Q |
199 |
gggtgagtggaggtatggaggagagaga |
226 |
Q |
| |
|
|||||||||||||||||||||||||||| |
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|
| T |
3788618 |
gggtgagtggaggtatggaggagagaga |
3788591 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 185 - 226
Target Start/End: Original strand, 37689788 - 37689829
Alignment:
| Q |
185 |
tggctggtggtggtgggtgagtggaggtatggaggagagaga |
226 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||| |
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|
| T |
37689788 |
tggctggtggtggtgggtgagtgggggtatggaggagagaga |
37689829 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 46
Target Start/End: Original strand, 37689707 - 37689751
Alignment:
| Q |
2 |
attgtttttaataattggttccataaaaaacatgcttcttaattg |
46 |
Q |
| |
|
|||| |||| ||||||||||||||||||| |||| |||||||||| |
|
|
| T |
37689707 |
attgattttgataattggttccataaaaagcatgtttcttaattg |
37689751 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 168; Significance: 4e-90; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 26021576 - 26021803
Alignment:
| Q |
1 |
aattgtttttaataattggttccataaaaaa--catgcttcttaattgcaacacgtgaagaattggtttgaatctttaattttaaatttttggatannnn |
98 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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|
| T |
26021576 |
aattgtttttaataattggttccataaaaaaaacatgcttcctaattgcaacacgtgaagaattggtttgaatctttaattttaaatttttgggtatttt |
26021675 |
T |
|
| Q |
99 |
nnnaaaaacaacatgatgaagatgaaaatggattgtagtttcatggtggatgatatgctagtgttgatggttcatggtctctgatatggctggtggtggt |
198 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||| ||||||||| |||| |
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|
| T |
26021676 |
ttgaaaaacaacatggtgaagatgaaaatggattgtagtttcatgatggatgagatgctagtgttgatggttcatggtctctgatgtggctggtgatggt |
26021775 |
T |
|
| Q |
199 |
gggtgagtggaggtatggaggagagaga |
226 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
26021776 |
gggtgagtggaggtatggaggagagaga |
26021803 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 165; Significance: 2e-88; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 1488150 - 1488378
Alignment:
| Q |
1 |
aattgtttttaataattggttccataaaaaa--catgcttcttaattgcaacacgtgaagaattggtttgaatctttaattttaaatttttggatannnn |
98 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| || |
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|
| T |
1488150 |
aattgtttttaataattggttccataaaaaaaacatgcttcttaattgcaacacgtgaattattggtttgaatctttaattttaaatttttgggtatttt |
1488249 |
T |
|
| Q |
99 |
nnnaaaaacaacatgatgaagatgaaaatggattgtagtttcatggtggatgatatgctagtgttgatggttcatggtctctgatatggctggtggtggt |
198 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||| |
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|
| T |
1488250 |
tttaaaaacaacatggtgaagatgaaaatggattgtagtttcatggtggatgagatgctagtgttgatggttcatggtctctgatgtggctggtggtggt |
1488349 |
T |
|
| Q |
199 |
gggtgagtgga-ggtatggaggagagaga |
226 |
Q |
| |
|
||||||||||| ||||||||||||||||| |
|
|
| T |
1488350 |
gggtgagtggagggtatggaggagagaga |
1488378 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 185 - 226
Target Start/End: Original strand, 30003423 - 30003464
Alignment:
| Q |
185 |
tggctggtggtggtgggtgagtggaggtatggaggagagaga |
226 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
30003423 |
tggctggtggtggtgggtgagtgggggtatggaggagagaga |
30003464 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 59
Target Start/End: Original strand, 30003342 - 30003400
Alignment:
| Q |
2 |
attgtttttaataattggttccataaaaaacatgcttcttaattgcaa-cacgtgaaga |
59 |
Q |
| |
|
|||| |||| ||||||||||||||||||| |||| |||||||||| || |||||||||| |
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|
| T |
30003342 |
attgattttgataattggttccataaaaagcatgtttcttaattgtaagcacgtgaaga |
30003400 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 6 - 62
Target Start/End: Original strand, 28123965 - 28124021
Alignment:
| Q |
6 |
tttttaataattggttccataaaaaacatgcttcttaattgcaacacgtgaagaatt |
62 |
Q |
| |
|
|||||| ||||||| |||||||||| | || |||||||||||||||||||||||||| |
|
|
| T |
28123965 |
tttttattaattgggtccataaaaagcttgtttcttaattgcaacacgtgaagaatt |
28124021 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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