View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1511_low_168 (Length: 240)
Name: NF1511_low_168
Description: NF1511
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1511_low_168 |
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| [»] scaffold0427 (2 HSPs) |
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Alignment Details
Target: scaffold0427 (Bit Score: 79; Significance: 5e-37; HSPs: 2)
Name: scaffold0427
Description:
Target: scaffold0427; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 136 - 226
Target Start/End: Complemental strand, 7288 - 7198
Alignment:
| Q |
136 |
gtgaattacaaaacccagatgggttataaagagaaaatttccgaaatgagtgatttaagtctatgagaagagaaaattgaacttcaaattg |
226 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||| |||||| |
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| T |
7288 |
gtgaattacaaaacccagatgggttataaagagaaaatttccaaaatgagtgatttaagtctatgggaagagaaaattgaacttgaaattg |
7198 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0427; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 36 - 66
Target Start/End: Complemental strand, 7388 - 7358
Alignment:
| Q |
36 |
acccttttttcaacaaaatgctcagaaaccc |
66 |
Q |
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| T |
7388 |
acccttttttcaacaaaatgctcagaaaccc |
7358 |
T |
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Target: chr5 (Bit Score: 79; Significance: 5e-37; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 136 - 226
Target Start/End: Complemental strand, 3385666 - 3385576
Alignment:
| Q |
136 |
gtgaattacaaaacccagatgggttataaagagaaaatttccgaaatgagtgatttaagtctatgagaagagaaaattgaacttcaaattg |
226 |
Q |
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| T |
3385666 |
gtgaattacaaaacccagatgggttataaagagaaaatttccaaaatgagtgatttaagtctatgggaagagaaaattgaacttgaaattg |
3385576 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 36 - 66
Target Start/End: Complemental strand, 3385768 - 3385738
Alignment:
| Q |
36 |
acccttttttcaacaaaatgctcagaaaccc |
66 |
Q |
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| T |
3385768 |
acccttttttcaacaaaatgctcagaaaccc |
3385738 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 70; Significance: 1e-31; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 136 - 226
Target Start/End: Original strand, 4296680 - 4296772
Alignment:
| Q |
136 |
gtgaattacaaaacccagatgggttataaagagaaaatttccgaaatgagtgatttaagtc--tatgagaagagaaaattgaacttcaaattg |
226 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||| |||||||||||||||||| |||||| |
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| T |
4296680 |
gtgaattacaaaacccagatgggttataaagagaaaatttccaaaatgagtgatttaagtctatatgggaagagaaaattgaacttgaaattg |
4296772 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 36 - 66
Target Start/End: Original strand, 4296580 - 4296610
Alignment:
| Q |
36 |
acccttttttcaacaaaatgctcagaaaccc |
66 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
4296580 |
acccttttttcaacaaaatgctcagaaaccc |
4296610 |
T |
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