View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1511_low_169 (Length: 240)
Name: NF1511_low_169
Description: NF1511
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1511_low_169 |
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Alignment Details
Target: chr8 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 234
Target Start/End: Complemental strand, 7211790 - 7211558
Alignment:
| Q |
1 |
gagcttcgacaaaatcatggtgccat--cgtgatttcgtcaaagcacgtataactttgtacataagtaaggaggaaatacttaatttaacaaaatcatgg |
98 |
Q |
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| T |
7211790 |
gagcttcgacaaaatcatggtgccatatcatgatttcgtcaaagcacttataactttgtacataagtaagga---aatacttaatttaacaaaatcatgg |
7211694 |
T |
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| Q |
99 |
tgtcatcgtgatttcgtcaaaggatatagaatatagcgaaggaggatagggaacttactaaatgtaccaagatacaagtccttgtttcctgcaacccttc |
198 |
Q |
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| T |
7211693 |
tgtcatcgtgatttcgtcaaaggatatagaatatagcgaaggaggatagggaacttactaaatgtaccaagatacaagtccttgtttcctgcaacccttc |
7211594 |
T |
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| Q |
199 |
caatccgagcctgccaccttccatgttgatgatgtc |
234 |
Q |
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||||||||||||||||||||||||||||||| |||| |
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| T |
7211593 |
caatccgagcctgccaccttccatgttgatggtgtc |
7211558 |
T |
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Back To:
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Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 180 - 234
Target Start/End: Original strand, 30618714 - 30618768
Alignment:
| Q |
180 |
ttgtttcctgcaacccttccaatccgagcctgccaccttccatgttgatgatgtc |
234 |
Q |
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| T |
30618714 |
ttgttgcctgcaactcttccaatcctagcttgccatctaccatgttgatgatgtc |
30618768 |
T |
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