View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1511_low_17 (Length: 574)
Name: NF1511_low_17
Description: NF1511
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1511_low_17 |
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| [»] scaffold0231 (1 HSPs) |
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| [»] scaffold0003 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 494; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 494; E-Value: 0
Query Start/End: Original strand, 18 - 564
Target Start/End: Complemental strand, 24027846 - 24027300
Alignment:
| Q |
18 |
ggtttatatttaccaaaagatgtttttagtcatgaccaaatttatgttgcactttctagagtaacaagcaagaaaggtataaaaatcctggcacatgatg |
117 |
Q |
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|||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
24027846 |
ggtttatatttaccaaaagatgtttttaatcatggccaaatttatgttgcactttctagagtaacaagcaagaaaggtataaaaatcctggtacatgatg |
24027747 |
T |
|
| Q |
118 |
aaaacaaggtggcaaaattaacaacaacaaatgttgtttttaaagaagttttccagaatgtttgacaggtaacttatatgtacattataaatcttcatca |
217 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||| |||||| |
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| T |
24027746 |
aaaacaaggtggcaaaactaacaacaacaaatgttgtttttaaagaagttttccagaatgtttgacaggtaactaatatgaacattataaatcctcatca |
24027647 |
T |
|
| Q |
218 |
attttagtttcattttaaatgnnnnnnngtactcctactaaattaaaactcatataaacaacaactctaaaatcttcacttacaatatatatcattttac |
317 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24027646 |
attttagtttcattttaaatgtttttttgtactcctactaaattaaaactcatataaacaacaactctaaaatcttcacttacaatatatatcattttac |
24027547 |
T |
|
| Q |
318 |
acgcaggtgtgatgatccagctctttcagcatgtaatgaaattcatccctttttgaagtgcatcctggaaacaattaaacaatcattatgtcaagttttt |
417 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24027546 |
acgcaggtgtgatgatctagctctttcagcatgtaatgaaattcatccctttttgaagtgcatcctggaaacaattaaacaatcattatgtcaagttttt |
24027447 |
T |
|
| Q |
418 |
tatatatttcctttaatgttatattccagttatctttttaactggattctataattatgtaatattcaactttaatataacatttgtaagacattgtctt |
517 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24027446 |
tatatatttcctttaatgttatattccagttatctttttaactggattctataattatgtaatattcaactttaatataacatttgtaagacattgtctt |
24027347 |
T |
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| Q |
518 |
tatcagccacgaatttctcatcatgtttctcaattaattttcctttg |
564 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24027346 |
tatcagccacgaatttctcatcatgtttctcaattaattttcctttg |
24027300 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 22 - 124
Target Start/End: Complemental strand, 149146 - 149044
Alignment:
| Q |
22 |
tatatttaccaaaagatgtttttagtcatgaccaaatttatgttgcactttctagagtaacaagcaagaaaggtataaaaatcctggcacatgatgaaaa |
121 |
Q |
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|||||||||||| |||||| |||||||||| |||||||||||||| | || || ||||||||||| |||||||| ||||| || |||||||||||| |
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| T |
149146 |
tatatttaccaagagatgtatttagtcatggtcaaatttatgttgccatatcaagggtaacaagcaaaaaaggtatcaaaattttgatacatgatgaaaa |
149047 |
T |
|
| Q |
122 |
caa |
124 |
Q |
| |
|
||| |
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| T |
149046 |
caa |
149044 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0231 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0231
Description:
Target: scaffold0231; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 17 - 51
Target Start/End: Original strand, 9559 - 9593
Alignment:
| Q |
17 |
aggtttatatttaccaaaagatgtttttagtcatg |
51 |
Q |
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|||||||||||| |||||||||||||||||||||| |
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| T |
9559 |
aggtttatatttgccaaaagatgtttttagtcatg |
9593 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 17 - 51
Target Start/End: Original strand, 22322545 - 22322579
Alignment:
| Q |
17 |
aggtttatatttaccaaaagatgtttttagtcatg |
51 |
Q |
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|||||||||||| |||||||||||||||||||||| |
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| T |
22322545 |
aggtttatatttgccaaaagatgtttttagtcatg |
22322579 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 41 - 97
Target Start/End: Complemental strand, 122438 - 122382
Alignment:
| Q |
41 |
ttttagtcatgaccaaatttatgttgcactttctagagtaacaagcaagaaaggtat |
97 |
Q |
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|||||| |||| ||||||||||||||||||||||| || || ||||| |||||||| |
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| T |
122438 |
ttttagccatggacaaatttatgttgcactttctagggtgactagcaaaaaaggtat |
122382 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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