View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1511_low_170 (Length: 239)
Name: NF1511_low_170
Description: NF1511
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1511_low_170 |
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Alignment Details
Target: chr5 (Bit Score: 213; Significance: 1e-117; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 38821399 - 38821619
Alignment:
| Q |
1 |
ctgcagcaggtgccatccaaattttgtcttgcacattacaactttgtttaaaggtgcactaaacacagcctcctcaaattcaggaacctgttgcatttac |
100 |
Q |
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| T |
38821399 |
ctgcagcaggtgccatccaaattttgtcttgcacattacaactttgtttaaaggtgcactaaacacagcctcctcaaattcaggaacctgatgcatttac |
38821498 |
T |
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| Q |
101 |
atcaacagagatatgtccaatcacataattgtactattgtaatgtaaaattaattttaaaaaaggcacttctataactaggtctatatttctacttcatg |
200 |
Q |
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| T |
38821499 |
atcaacaaagatatgtccaatcacataattgtactattgtaatgtaaaattaattttaaaaaaggcacttctataactaggtctatatttctacttcatg |
38821598 |
T |
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| Q |
201 |
aacttcactctacagaatcat |
221 |
Q |
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| T |
38821599 |
aacttcactctacagaatcat |
38821619 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 2 - 139
Target Start/End: Original strand, 38814914 - 38815051
Alignment:
| Q |
2 |
tgcagcaggtgccatccaaattttgtcttgcacattacaactttgtttaaaggtgcactaaacacagcctcctcaaattcaggaacctgttgcatttaca |
101 |
Q |
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| T |
38814914 |
tgcagcaagtgccatccaaattgggtcttgcaccttacaattttgtttaaaggtgcactaaacgcagcctcctcaaattcaggaacctgtcgcattttca |
38815013 |
T |
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| Q |
102 |
tcaacagagatatgtccaatcacataattgtactattg |
139 |
Q |
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| T |
38815014 |
taattagagatatgttcaatcacataactgtactattg |
38815051 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 144 - 193
Target Start/End: Original strand, 38816082 - 38816131
Alignment:
| Q |
144 |
gtaaaattaattttaaaaaaggcacttctataactaggtctatatttcta |
193 |
Q |
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| T |
38816082 |
gtaaaattaattttaaaaattacacttctataactaggtttacatttcta |
38816131 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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