View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1511_low_172 (Length: 238)
Name: NF1511_low_172
Description: NF1511
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1511_low_172 |
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Alignment Details
Target: chr8 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 11531799 - 11532019
Alignment:
| Q |
1 |
cacaagggacatatatgcttaaggaagttgtatttagtggtccatgcaatgcttggatggactttcatattgaaggattattgaaagctccaagtgatcc |
100 |
Q |
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| T |
11531799 |
cacaagggacatatatgcttaaggaagttgtatttagtggtccatgcaatgcttggatgaactttcatattgaaggactattgaaagctccaagtgatcc |
11531898 |
T |
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| Q |
101 |
atattcatttaagaatggtgattggataaattttagatatgttaacaaattgactgttggtggaggtggtatattgtatggtcaaggatcttctgcttgg |
200 |
Q |
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| T |
11531899 |
atattcatttaagaatggtgattggataaattttagatatgttaacaaattaactgttggtggaggtggtatattgtatggtcaaggatcttctgcttgg |
11531998 |
T |
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| Q |
201 |
aaaactaacgattgcaaaaag |
221 |
Q |
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| T |
11531999 |
aaaactaacgattgcaaaaag |
11532019 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 79; Significance: 5e-37; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 1 - 195
Target Start/End: Complemental strand, 50496114 - 50495920
Alignment:
| Q |
1 |
cacaagggacatatatgcttaaggaagttgtatttagtggtccatgcaatgcttggatggactttcatattgaaggattattgaaagctccaagtgatcc |
100 |
Q |
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| T |
50496114 |
cacaagggacatatatgcttaaggatgttaacttcagtggtccatgtaatgcttagataaattttataattgaatgattattgaaggctctaagtaatcc |
50496015 |
T |
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| Q |
101 |
atattcatttaagaatggtgattggataaattttagatatgttaacaaattgactgttggtggaggtggtatattgtatggtcaaggatcttctg |
195 |
Q |
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| T |
50496014 |
agattcatttgcaactaataattggataaattttagatatgttaacaaattaactgttggtggaggtggcacattggatggtcaaggatcttctg |
50495920 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 70 - 204
Target Start/End: Original strand, 26300315 - 26300449
Alignment:
| Q |
70 |
ttgaaggattattgaaagctccaagtgatccatattcatttaagaatggtgattggataaattttagatatgttaacaaattgactgttggtggaggtgg |
169 |
Q |
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| T |
26300315 |
ttgaaggacttttgaaggctccaattgatccaaaatcatttgctagtgataattggatcaatttcaaatatgttaacaagttaatggttggtggaggtgg |
26300414 |
T |
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| Q |
170 |
tatattgtatggtcaaggatcttctgcttggaaaa |
204 |
Q |
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| T |
26300415 |
atcattggatgctcaaggagcttatgcttggaaaa |
26300449 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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