View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1511_low_176 (Length: 237)
Name: NF1511_low_176
Description: NF1511
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1511_low_176 |
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Alignment Details
Target: chr7 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 35108312 - 35108531
Alignment:
| Q |
1 |
tactaatttttaaatcagggattaattatgaaaataattactactaaaatctgcatgcaaccaataattacctcacggttataaacttgagcagggaacc |
100 |
Q |
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| T |
35108312 |
tactaatttttaaatcagggattaattatgaaaataattactactaaaatctgcatgcaaccaataattacctcacggttataaacttgagcagggaacc |
35108411 |
T |
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| Q |
101 |
aaaattttccattctcaagagaaagataaagagcagcaattgagtcatctggccttgactttatgtatttttctgattttgatttaatccaaaagaatgg |
200 |
Q |
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| T |
35108412 |
aaaattttccattctcaagagaaagataaagagcagcaattgagtcatctggccttgactttatgtatttttctgattttgatttaatccaaaagaatgg |
35108511 |
T |
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| Q |
201 |
aagaaaagcatgaaggaaag |
220 |
Q |
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| T |
35108512 |
aagaaaagcatgaaggaaag |
35108531 |
T |
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Back To:
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Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 68 - 128
Target Start/End: Original strand, 38728658 - 38728718
Alignment:
| Q |
68 |
ttacctcacggttataaacttgagcagggaaccaaaattttccattctcaagagaaagata |
128 |
Q |
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| T |
38728658 |
ttacctcacggttataaacttgagcaggaaaggaaaaattgccagtctcaagagcaagata |
38728718 |
T |
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