View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1511_low_180 (Length: 235)
Name: NF1511_low_180
Description: NF1511
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1511_low_180 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 142; Significance: 1e-74; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 16 - 225
Target Start/End: Complemental strand, 28541288 - 28541076
Alignment:
| Q |
16 |
agaattattggtgagagatgccaaatttctcttgtttgattgtgaaggagttggcaagagatgctgctttaacat-gggacctatcgtca-tttgtttct |
113 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| ||||||||| |
|
|
| T |
28541288 |
agaattattggcaagagatgccaaatttctcttgtttgattgtgaaggagttggcaaaagatgctgctttaacatggggacctatcgtcattttgtttct |
28541189 |
T |
|
| Q |
114 |
tccctaacctgc---gaagaaagggggaagaaaccagcttcacaagttgtttaaagattctattatatatgtctttcaaatacaagttctaacttctttt |
210 |
Q |
| |
|
| |||||| ||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
28541188 |
tacctaacatgcaaataagaaagggggaagaaaccagcttcacaagttgtttaaagattatattatata--tctttcaaatacaagttctaacttctttt |
28541091 |
T |
|
| Q |
211 |
ataaaataaattgtt |
225 |
Q |
| |
|
||||||||| ||||| |
|
|
| T |
28541090 |
ataaaataagttgtt |
28541076 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 16 - 225
Target Start/End: Complemental strand, 28557903 - 28557692
Alignment:
| Q |
16 |
agaattattggtgagagatgccaaatttctcttgtttgattgtgaaggagttggcaagagatgctgcttt-aacatgggacctatcgtca-tttgtttct |
113 |
Q |
| |
|
||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||| |
|
|
| T |
28557903 |
agaattattggcaacagatgccaaatttctcttgtttgattgtgaaggagttggcaagagatgctgctttaaacatgggacctatcgtcattttgtttct |
28557804 |
T |
|
| Q |
114 |
tccctaacctgc---gaagaaagggggaagaaaccagcttcacaagttgtttaaagattctattatatatgtctttcaaatacaagttctaacttctttt |
210 |
Q |
| |
|
| |||||| ||| |||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||| |||||||||||||| |||||||| |
|
|
| T |
28557803 |
tacctaacatgcaaataagaaagggggaagaaaccagctttaca---tgtttaaagattctattatatatgtctttgaaatacaagttctatcttctttt |
28557707 |
T |
|
| Q |
211 |
ataaaataaattgtt |
225 |
Q |
| |
|
||||||||| ||||| |
|
|
| T |
28557706 |
ataaaataagttgtt |
28557692 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 22 - 164
Target Start/End: Complemental strand, 28563087 - 28562944
Alignment:
| Q |
22 |
attggtgagagatgccaaatttctcttgtttgattgtgaaggagttggcaagagatgctgctttaacatgggacctatcgtca-tttgtttcttccctaa |
120 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||| ||||||| ||||| |||||||||| ||||||||||| |||| ||||||||| ||||| |
|
|
| T |
28563087 |
attggtgcaagatgccaaatttctcttgtttgattgtgaagaagttggcgagagaggctgctttaatatgggacctattgtcattttgtttctgtcctaa |
28562988 |
T |
|
| Q |
121 |
cctgcgaagaaagggggaagaaaccagcttcacaagttgtttaa |
164 |
Q |
| |
|
| ||||||||||||||| |||||||||||||||||||| ||||| |
|
|
| T |
28562987 |
catgcgaagaaaggggggagaaaccagcttcacaagttttttaa |
28562944 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 16 - 107
Target Start/End: Complemental strand, 28568597 - 28568502
Alignment:
| Q |
16 |
agaattattggtgaga----gatgccaaatttctcttgtttgattgtgaaggagttggcaagagatgctgctttaacatgggacctatcgtcattt |
107 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||| ||||||| ||||| | |||||||||||||| | ||| ||||||| |
|
|
| T |
28568597 |
agaattattggtgagatcaagatgccaaatttctcttgtttgattgtgaagaagttggcgagagaggttgctttaacatgggccgtatagtcattt |
28568502 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 16 - 107
Target Start/End: Complemental strand, 28576190 - 28576095
Alignment:
| Q |
16 |
agaattattggtgaga----gatgccaaatttctcttgtttgattgtgaaggagttggcaagagatgctgctttaacatgggacctatcgtcattt |
107 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||| ||||||| ||||| | |||||||||||||| | ||| ||||||| |
|
|
| T |
28576190 |
agaattattggtgagatcaagatgccaaatttctcttgtttgattgtgaagaagttggcgagagaggttgctttaacatgggccgtatagtcattt |
28576095 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University