View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1511_low_194 (Length: 231)
Name: NF1511_low_194
Description: NF1511
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1511_low_194 |
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Alignment Details
Target: chr2 (Bit Score: 187; Significance: 1e-101; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 16 - 218
Target Start/End: Complemental strand, 1453539 - 1453337
Alignment:
| Q |
16 |
atgaacctgaagaagctggtgatggtggagaaagtggcactggaatgattttttgttgtttcatgcgaggattattatgataactgtaaagtggaacaca |
115 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1453539 |
atgaacctgaagaagctggtgatgatggagaaagtggcactgtaatgattttttgttgtttcatgcgaggattattatgataactgtaaagtggaacaca |
1453440 |
T |
|
| Q |
116 |
aggcattagcgaagtttcaggccatctgtcaacaataagacatagatatgaacataactatttgcactgacctgataggggtaaatattgaaaatgaacc |
215 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
1453439 |
aggcattagcgaagtttcaggctatctgtcaacaataagacatagatatgaacataactatttgccctgacctgataggggtaaatattgaaaatgaacc |
1453340 |
T |
|
| Q |
216 |
att |
218 |
Q |
| |
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||| |
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|
| T |
1453339 |
att |
1453337 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 16 - 218
Target Start/End: Complemental strand, 1447071 - 1446869
Alignment:
| Q |
16 |
atgaacctgaagaagctggtgatggtggagaaagtggcactggaatgattttttgttgtttcatgcgaggattattatgataactgtaaagtggaacaca |
115 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||| ||||| ||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
1447071 |
atgaacctgaagaagctggtgatggtggagaaagaggcactggaatgttttttggttgtttgatgcgaggattattatgataactgtaaagtggaacaca |
1446972 |
T |
|
| Q |
116 |
aggcattagcgaagtttcaggccatctgtcaacaataagacatagatatgaacataactatttgcactgacctgataggggtaaatattgaaaatgaacc |
215 |
Q |
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|||||||| |||||||||| ||||||||||||||||||||||||| ||||||||| ||||||||| ||||||||||||||||||| |||||||||||| |
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| T |
1446971 |
gagcattagcaaagtttcaggtcatctgtcaacaataagacatagatttgaacataattatttgcacagacctgataggggtaaataatgaaaatgaacc |
1446872 |
T |
|
| Q |
216 |
att |
218 |
Q |
| |
|
||| |
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|
| T |
1446871 |
att |
1446869 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 16 - 218
Target Start/End: Complemental strand, 1427830 - 1427629
Alignment:
| Q |
16 |
atgaacctgaagaagctggtgatggtggagaaagtggcactggaatgattttttgttgtttcatgcgaggattattatgataactgtaaagtggaacaca |
115 |
Q |
| |
|
||||||||||||||| ||||| ||||||||||||||| | ||| | ||||| ||||| ||| |||| ||||||| ||||||||||||||||||||||| |
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| T |
1427830 |
atgaacctgaagaagttggtgctggtggagaaagtggtgcgggagcgttttttggttgtatcaagcgacgattattttgataactgtaaagtggaacaca |
1427731 |
T |
|
| Q |
116 |
aggcattagcgaagtttcaggccatctgtcaacaataagacatagatatgaacataactatttgcactgacctgataggggtaaatattgaaaatgaacc |
215 |
Q |
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| ||||||| |||||||||| || | |||||||| ||||| | ||| ||| |||| ||| ||||| ||||||||||| ||||||| |||||||||||| |
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| T |
1427730 |
tgccattagcaaagtttcaggtcaaccgtcaacaacaagac-caaataagaaaataattatctgcaccgacctgataggagtaaataatgaaaatgaacc |
1427632 |
T |
|
| Q |
216 |
att |
218 |
Q |
| |
|
||| |
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|
| T |
1427631 |
att |
1427629 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 16 - 218
Target Start/End: Complemental strand, 1434678 - 1434476
Alignment:
| Q |
16 |
atgaacctgaagaagctggtgatggtggagaaagtggcactggaatgattttttgttgtttcatgcgaggattattatgataactgtaaagtggaacaca |
115 |
Q |
| |
|
|||||||||||||||||| ||||| |||||||||||| | ||||||||||| ||||||||| ||||||||||| |||||||||| |||| ||||| |
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|
| T |
1434678 |
atgaacctgaagaagctgatgatgctggagaaagtggtgcatgaatgatttttggttgtttcaaacgaggattattttgataactgtgaagtcaaacacg |
1434579 |
T |
|
| Q |
116 |
aggcattagcgaagtttcaggccatctgtcaacaataagacatagatatgaacataactatttgcactgacctgataggggtaaatattgaaaatgaacc |
215 |
Q |
| |
|
|| |||||| |||||||||| ||||||||||||||||| | || ||| |||||||| |||| |||| ||||| || |||||||| | |||||||||| |
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| T |
1434578 |
gggaattagcaaagtttcaggtcatctgtcaacaataaggcctaaataagaacataatgatttacactaacctggaagaggtaaataataaaaatgaacc |
1434479 |
T |
|
| Q |
216 |
att |
218 |
Q |
| |
|
||| |
|
|
| T |
1434478 |
att |
1434476 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 94 - 188
Target Start/End: Complemental strand, 1440058 - 1439964
Alignment:
| Q |
94 |
gataactgtaaagtggaacacaaggcattagcgaagtttcaggccatctgtcaacaataagacatagatatgaacataactatttgcactgacct |
188 |
Q |
| |
|
|||||||| ||||||||||||| |||||||| || ||||||| |||||||||| ||||||||||||||| |||||||| ||||||||| ||||| |
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| T |
1440058 |
gataactgcaaagtggaacacatggcattagaaaaatttcaggtcatctgtcaataataagacatagatacgaacataattatttgcaccgacct |
1439964 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 15 - 52
Target Start/End: Complemental strand, 1440134 - 1440097
Alignment:
| Q |
15 |
gatgaacctgaagaagctggtgatggtggagaaagtgg |
52 |
Q |
| |
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||||||||||||||||||||||| |||||||||||||| |
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| T |
1440134 |
gatgaacctgaagaagctggtgacggtggagaaagtgg |
1440097 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 21 - 163
Target Start/End: Original strand, 609576 - 609718
Alignment:
| Q |
21 |
cctgaagaagctggtgatggtggagaaagtggcactggaatgattttttgttgtttcatgcgaggattattatgataactgtaaagtggaacacaaggca |
120 |
Q |
| |
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||||||||||||| || |||||||| ||||| | ||||||||||| ||||||||| ||||||||||| ||||||||| |||| ||||| | ||| |
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| T |
609576 |
cctgaagaagctgacgacggtggagagagtggtgcaagaatgatttttggttgtttcaaccgaggattatttcgataactgtgaagtcgaacaaagggct |
609675 |
T |
|
| Q |
121 |
ttagcgaagtttcaggccatctgtcaacaataagacatagata |
163 |
Q |
| |
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||||| |||||||||| |||||||||||||||| ||||||||| |
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|
| T |
609676 |
ttagcaaagtttcaggtcatctgtcaacaataacacatagata |
609718 |
T |
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