View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1511_low_2 (Length: 862)
Name: NF1511_low_2
Description: NF1511
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1511_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 423; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 423; E-Value: 0
Query Start/End: Original strand, 321 - 843
Target Start/End: Original strand, 35889401 - 35889939
Alignment:
| Q |
321 |
acgttgcaaaatgattaaaatatctgattgcccagtagttatcgtgcacgtcacagatttcgccatgtatgtattttaagcaataagcacgtattccttt |
420 |
Q |
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| T |
35889401 |
acgttgcaaaatgattaaaatatctgattgcccagtagttatcgtgcacgtcacagattttgccatgtat----tttaagcaataagcacgtattccttt |
35889496 |
T |
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| Q |
421 |
cacattcccaaaccacccaaaatacttcaaaccatggttcctgtatagtataattaacgcctctttaatttcgatttaacacgtaacattttctaaccat |
520 |
Q |
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| T |
35889497 |
cacattcccaaaccacccaaaatacttcaaaccatggtttctgtatagcataattaacgcctctttaatttcgatttaacacgtaacattttctaaccat |
35889596 |
T |
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| Q |
521 |
tgcttcttaacaaagt-aaagttcaacaaagaaaatacgaatctaaggacggtttcataaaacagatacagaaattaaattcacaaatcaaaattagaga |
619 |
Q |
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| T |
35889597 |
tgcttcttaacaaagttaaagttcaacaaataaaataagaatctaaggacggtttcataaaacagatgcagaaattaaattcacaaatcaaaattagaga |
35889696 |
T |
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| Q |
620 |
aaacagaaaacctgattcattaggatttgtagagataatacaagaacattagatatgttcctatcaaagaatttacagcaacaacttcctaata-----a |
714 |
Q |
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| T |
35889697 |
aaacagaaaacctgattcattaggatttgtagagataatacaagaacattagatatgttcctatcaaagaatttacagcaacaacttcctaataatatta |
35889796 |
T |
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| Q |
715 |
tattatattatgataataaaatccaactc--------------taataaaccctcaaatttcacacatcactaaaaatccccaaattaaaccctaatttt |
800 |
Q |
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| T |
35889797 |
tattatattatgataataaaatccaactctaatactcatataataataaaccctcaaatttcacacatcactaaaaattcccaaattaaaccctaatttt |
35889896 |
T |
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| Q |
801 |
cacttcttagctttcttcaccggagtcttaacactcttcggct |
843 |
Q |
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| T |
35889897 |
cacttcttagctttcttcaccggagtcttaacactcttcggct |
35889939 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 118; E-Value: 9e-60
Query Start/End: Original strand, 9 - 193
Target Start/End: Original strand, 35889063 - 35889249
Alignment:
| Q |
9 |
gattattctttaatctctttcttttgaccaacatattttctaagttgatccggtcaaaagaaatgttgactttatcctttagcattcatatccatgaatc |
108 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||| |
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| T |
35889063 |
gattattccttaatctctttcttttgaccaacatattttctaagttgatccggtcaaaagaaatgttgactttatcctttcgttttcatatccatgaatc |
35889162 |
T |
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| Q |
109 |
aaatgtaggtccaaaaatcctaatataccca-ttgaatg-gnnnnnnngtttgcccaagaatataatccatgtggattcctaccggg |
193 |
Q |
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| T |
35889163 |
aaatgtaggtccaaaaatcctaatatacccatttgaaagaaggaaaaaaattgcccaagaatataatccatgtggattcctaccggg |
35889249 |
T |
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