View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1511_low_20 (Length: 545)
Name: NF1511_low_20
Description: NF1511
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1511_low_20 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 504; Significance: 0; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 504; E-Value: 0
Query Start/End: Original strand, 22 - 533
Target Start/End: Original strand, 41657757 - 41658268
Alignment:
| Q |
22 |
tcggacctaacatacctttaggtgaagtggcatctaggtcaggtcctatgcttgcaggaggtggcttctttaaagcagtaataagaggcaagggaggcca |
121 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41657757 |
tcggacctaacatacctttaggtgaagtggcatctaggtcaggtcctatgcttgcaggaggtggcttctttaaagcagtaataagaggcaagggaggcca |
41657856 |
T |
|
| Q |
122 |
tgcagccaatcctcaacatgctattgaccccattttggcggcttcgaatgtgattgttagcttacaacatatcgtttctcgcgaggctgatccccttgac |
221 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41657857 |
tgcagccaatcctcaacatgctattgaccccattttggcggcttcgaatgtgattgttagcttacaacatatcgtttctcgcgaggctgatccccttgac |
41657956 |
T |
|
| Q |
222 |
acccaggtaaaaacttgcaactcatcattgtttgaggaaaaatttttggaaaccatagtgcaacattgtttatttacaacgatttttgaatatgacgaaa |
321 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41657957 |
acccaggtaaaaacttgcaactcatcattgtttgaggaaaaaatgttggaaaccatagtgcaacattgtttatttacaacgatttttgaatatgacgaaa |
41658056 |
T |
|
| Q |
322 |
acctgaggtctgaatgccttcccaacataatatcctcacaggttgtgactgtaggaaatattcaaggaggtggtgcattcaatgttattccaaacttcgt |
421 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41658057 |
acctgaggtctgaatgccttcccaacataatatcctcacaggttgtgactgtaggaaatattcaaggaggtggtgcattcaatgttattccaaacttcgt |
41658156 |
T |
|
| Q |
422 |
cacaattggtggcaccttccgagcatttttgagagaaagcttcacgcaactaagacaacgtattgagcaggtctgttacaaagaagaacaaattcacaat |
521 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41658157 |
cacaattggtggcaccttccgagcatttttgagagaaagcttcacgcaactaagacaacgtattgagcaggtctgttacaaagaagaacaaattcacaat |
41658256 |
T |
|
| Q |
522 |
aatctctatatt |
533 |
Q |
| |
|
|||||||||||| |
|
|
| T |
41658257 |
aatctctatatt |
41658268 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 425; E-Value: 0
Query Start/End: Original strand, 18 - 533
Target Start/End: Complemental strand, 43211675 - 43211159
Alignment:
| Q |
18 |
catgtcggacctaacatacctttaggtgaagtggcatctaggtcaggtcctatgcttgcaggaggtggcttctttaaagcagtaataagaggcaagggag |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43211675 |
catgtcggacctaacatacctttaggtgaagtggcatctaggtcaggtcctatgcttgcaggaggtggcttctttaaagcagtaataagaggcaagggag |
43211576 |
T |
|
| Q |
118 |
gccatgcagccaatcctcaacatgctattgaccccattttggcggcttcgaatgtgattgttagcttacaacatatcgtttctcgcgaggctgatcccct |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| |
|
|
| T |
43211575 |
gccatgcagccaatcctcaacatgctattgaccccattttggcggcttcgaatgtgattgttagcttacaacatattgtttcacgcgaggctgatcccct |
43211476 |
T |
|
| Q |
218 |
tgacacccaggtaaaaacttgcaactcatcattgtttgagga-aaaatttttggaaaccatagtgcaacattgtttatttacaacgatttttgaatatga |
316 |
Q |
| |
|
||| ||||||||||||| |||||||||||||||||||||||| |||| | ||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43211475 |
tgaaacccaggtaaaaatttgcaactcatcattgtttgaggaaaaaaatgttggaaaccgtagtgcaacattgtttatttacaacgatttttgaatatga |
43211376 |
T |
|
| Q |
317 |
cgaaaacctgaggtctgaatgccttcccaacataatatcctcacaggttgtgactgtaggaaatattcaaggaggtggtgcattcaatgttattccaaac |
416 |
Q |
| |
|
||||||| | || |||||||| ||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| || |
|
|
| T |
43211375 |
cgaaaacataagatctgaatgtcttcctaacctaatatcctcacaggttgtgactgtaggaaatattcaaggaggtggtgcagtcaatgttattccagac |
43211276 |
T |
|
| Q |
417 |
ttcgtcacaattggtggcaccttccgagcatttttgagagaaagcttcacgcaactaagacaacgtattgagcaggtctgttacaaagaagaacaaattc |
516 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
43211275 |
tccgtcacaattggtggcaccttccgagcatttttgagagaaagcctcacgcaactaagacaccgtattgagcaggtctgttacaaagaagaccaaattc |
43211176 |
T |
|
| Q |
517 |
acaataatctctatatt |
533 |
Q |
| |
|
||||| || |||||||| |
|
|
| T |
43211175 |
acaatgatatctatatt |
43211159 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 29 - 502
Target Start/End: Original strand, 41651752 - 41652229
Alignment:
| Q |
29 |
taacatacctttaggtgaagtggcatctaggtcaggtcctatgcttgcaggaggtggcttctttaaagcagtaataagaggcaagggaggccatgcagcc |
128 |
Q |
| |
|
|||| ||||||||||||||||||| |||||||| |||||||| ||||||| | || |||||| ||||||||||||| |||| ||| || |||| |||| |
|
|
| T |
41651752 |
taacttacctttaggtgaagtggcttctaggtctggtcctattgctgcaggaagcggtttctttgaagcagtaataagcggcatggggggtcatggagcc |
41651851 |
T |
|
| Q |
129 |
aatcctcaacatgctattgaccccattttggcggcttcgaatgtgattgttagcttacaacatatcgtttctcgcgaggctgatccccttgacacccagg |
228 |
Q |
| |
|
| |||||| |||||||| |||||||||||||||||||| ||||| |||||||||||||||| || ||||||||||||| ||||||| | ||| |||||| |
|
|
| T |
41651852 |
attcctcaccatgctatcgaccccattttggcggcttccaatgtagttgttagcttacaacaaattgtttctcgcgaggttgatcccgtagactcccagg |
41651951 |
T |
|
| Q |
229 |
taaaaacttgcaactcatcattgtttgaggaaaaatttttggaaac---cat--agtgcaacattgtttatttacaacgatttttgaatatgacgaaaac |
323 |
Q |
| |
|
||||| || |||||||| |||||||| | ||| || || | ||| | || ||||| ||| ||||||| ||||||| |||||||||||||| |
|
|
| T |
41651952 |
taaaagtttacaactcatgattgtttgc---accattgtttgattctgtcatttaccgccacattatttgtttacaatgattttttaatatgacgaaaac |
41652048 |
T |
|
| Q |
324 |
ctgaggtctgaatgccttcccaaca--taatatcctcacaggttgtgactgtaggaaatattcaaggaggtggtgcattcaatgttattccaaacttcgt |
421 |
Q |
| |
|
|||||| || |||||||||| |||| |||||||||| ||||||||||| |||||||| |||||||||||||||||||||||||||||||| ||| || |
|
|
| T |
41652049 |
ctgaggcctaaatgccttcctaacaaataatatcctcgcaggttgtgacagtaggaaagtttcaaggaggtggtgcattcaatgttattccagactctgt |
41652148 |
T |
|
| Q |
422 |
cacaattggtggcaccttccgagcatttttgagagaaagcttcacgcaactaagacaacgtattgagcaggtctgttacaa |
502 |
Q |
| |
|
|||||||||||||||||||||||| ||| ||||||||||||||||| || ||||| |||||||||||||||||| |||| |
|
|
| T |
41652149 |
cacaattggtggcaccttccgagcttttccaagagaaagcttcacgcatctgagacaccgtattgagcaggtctgtcacaa |
41652229 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 284 - 500
Target Start/End: Complemental strand, 43226046 - 43225826
Alignment:
| Q |
284 |
acattgtttatttacaacgatttttgaatatgacgaaaacctgaggtctgaatgccttcccaacataa----tatcctcacaggttgtgactgtaggaaa |
379 |
Q |
| |
|
||||| ||| ||||||| ||||||||||||||| ||||||||||||||| |||||||| | ||||||| ||| |||| ||||||||||||||||||| |
|
|
| T |
43226046 |
acattatttgtttacaatgatttttgaatatgatgaaaacctgaggtctaaatgcctttctaacataaataatatactcataggttgtgactgtaggaaa |
43225947 |
T |
|
| Q |
380 |
tattcaaggaggtggtgcattcaatgttattccaaacttcgtcacaattggtggcaccttccgagcatttttgagagaaagcttcacgcaactaagacaa |
479 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||| |||| |||||||||||||||||| || ||||| |
|
|
| T |
43225946 |
gtttcaaggaggtggtgcattcaatgttattccagactccgtcacaattggtggcaccttccgagctttttcgagagaaagcttcacgcatctgagacac |
43225847 |
T |
|
| Q |
480 |
cgtattgagcaggtctgttac |
500 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
43225846 |
cgtattgagcaggtctgttac |
43225826 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 29 - 255
Target Start/End: Complemental strand, 43226349 - 43226123
Alignment:
| Q |
29 |
taacatacctttaggtgaagtggcatctaggtcaggtcctatgcttgcaggaggtggcttctttaaagcagtaataagaggcaagggaggccatgcagcc |
128 |
Q |
| |
|
|||| |||||||||||||||||||||| ||||| ||||||||| ||||||| |||| |||||| ||||||||||||| |||| ||| || |||| |||| |
|
|
| T |
43226349 |
taacttacctttaggtgaagtggcatcgaggtctggtcctatggctgcaggatgtggtttctttgaagcagtaataagcggcatggggggtcatggagcc |
43226250 |
T |
|
| Q |
129 |
aatcctcaacatgctattgaccccattttggcggcttcgaatgtgattgttagcttacaacatatcgtttctcgcgaggctgatccccttgacacccagg |
228 |
Q |
| |
|
| |||||| |||||||| |||||||||||||| ||||| ||||| |||||||||||||||| |||||||||||||||| ||||||| | ||| |||||| |
|
|
| T |
43226249 |
attcctcaccatgctatcgaccccattttggctgcttccaatgtagttgttagcttacaacaaatcgtttctcgcgaggttgatcccgtagactcccagg |
43226150 |
T |
|
| Q |
229 |
taaaaacttgcaactcatcattgtttg |
255 |
Q |
| |
|
||||| ||| |||||||| |||||||| |
|
|
| T |
43226149 |
taaaagcttacaactcatgattgtttg |
43226123 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 29 - 232
Target Start/End: Complemental strand, 43204641 - 43204438
Alignment:
| Q |
29 |
taacatacctttaggtgaagtggcatctaggtcaggtcctatgcttgcaggaggtggcttctttaaagcagtaataagaggcaagggaggccatgcagcc |
128 |
Q |
| |
|
|||| ||||| ||||||||||||| |||||||| |||||||| |||||||| |||||||||||||||||||||||| |||| |||||||||||||||| |
|
|
| T |
43204641 |
taacttacctctaggtgaagtggcttctaggtccggtcctatatttgcaggaaatggcttctttaaagcagtaataagcggcaggggaggccatgcagcc |
43204542 |
T |
|
| Q |
129 |
aatcctcaacatgctattgaccccattttggcggcttcgaatgtgattgttagcttacaacatatcgtttctcgcgaggctgatccccttgacacccagg |
228 |
Q |
| |
|
| |||||||||| |||| ||||| || ||||| |||| ||||||||||||||||||||||| || |||||||||||| ||||||||| ||| | |||| |
|
|
| T |
43204541 |
attcctcaacattctatagaccctatattggcaacttccaatgtgattgttagcttacaacaaattgtttctcgcgagattgatcccctcgactctcagg |
43204442 |
T |
|
| Q |
229 |
taaa |
232 |
Q |
| |
|
|||| |
|
|
| T |
43204441 |
taaa |
43204438 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 348 - 509
Target Start/End: Complemental strand, 43204049 - 43203888
Alignment:
| Q |
348 |
ataatatcctcacaggttgtgactgtaggaaatattcaaggaggtggtgcattcaatgttattccaaacttcgtcacaattggtggcaccttccgagcat |
447 |
Q |
| |
|
|||||||||||| ||||| ||||||||| || ||||||||||||||||||||||||||||||||| ||| ||||||||||||||||| |||||||| | |
|
|
| T |
43204049 |
ataatatcctcataggttttgactgtagcaatgattcaaggaggtggtgcattcaatgttattccagactctgtcacaattggtggcactttccgagctt |
43203950 |
T |
|
| Q |
448 |
ttttgagagaaagcttcacgcaactaagacaacgtattgagcaggtctgttacaaagaagaa |
509 |
Q |
| |
|
||| | ||||||||||| ||||| ||||| || ||||||||||||||||| |||||||| |
|
|
| T |
43203949 |
tttcaaacgaaagcttcacacaactgagacaccgcattgagcaggtctgttatgaagaagaa |
43203888 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 59; Significance: 1e-24; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 36 - 255
Target Start/End: Complemental strand, 25928589 - 25928362
Alignment:
| Q |
36 |
cctttaggtgaagtggcatctaggtcaggtcctatgcttgcaggaggtggcttctttaaagcagtaataagaggcaag--------ggaggccatgcagc |
127 |
Q |
| |
|
||||||||||| | |||| |||||| |||||||| ||||||||| |||| |||||| ||||||||||||| |||| | || || |||| ||| |
|
|
| T |
25928589 |
cctttaggtgacattgcatttaggtctggtcctattcttgcaggaagtggtttctttgaagcagtaataagcggcatgtggtggggggggggcatggagc |
25928490 |
T |
|
| Q |
128 |
caatcctcaacatgctattgaccccattttggcggcttcgaatgtgattgttagcttacaacatatcgtttctcgcgaggctgatccccttgacacccag |
227 |
Q |
| |
|
|| |||||| |||| | | ||||||||||||||||||| ||||| | | ||||||||||||| || ||||||||||||| ||||||| | ||| |||| |
|
|
| T |
25928489 |
cattcctcaccatgttctcaaccccattttggcggcttccaatgtaactattagcttacaacaaatagtttctcgcgaggttgatcccatagactcccaa |
25928390 |
T |
|
| Q |
228 |
gtaaaaacttgcaactcatcattgtttg |
255 |
Q |
| |
|
|||||| ||| |||||||| | |||||| |
|
|
| T |
25928389 |
gtaaaagcttacaactcatgaatgtttg |
25928362 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 360 - 493
Target Start/End: Complemental strand, 5070594 - 5070461
Alignment:
| Q |
360 |
caggttgtgactgtaggaaatattcaaggaggtggtgcattcaatgttattccaaacttcgtcacaattggtggcaccttccgagcatttttgagagaaa |
459 |
Q |
| |
|
||||||||||| | | ||| || ||||||||| |||||||||||||||||||| | |||||||||||||| ||||||||||| |||| | ||||| |
|
|
| T |
5070594 |
caggttgtgacgattgcaaagatccaaggaggtagtgcattcaatgttattccagatcatgtcacaattggtggtaccttccgagccttttctaaagaaa |
5070495 |
T |
|
| Q |
460 |
gcttcacgcaactaagacaacgtattgagcaggt |
493 |
Q |
| |
|
|||||| ||||| ||||| || |||||| |||| |
|
|
| T |
5070494 |
gcttcaaccaactgagacagcggattgaggaggt |
5070461 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 42 - 232
Target Start/End: Complemental strand, 5071398 - 5071208
Alignment:
| Q |
42 |
ggtgaagtggcatctaggtcaggtcctatgcttgcaggaggtggcttctttaaagcagtaataagaggcaagggaggccatgcagccaatcctcaacatg |
141 |
Q |
| |
|
||||||||| | || ||||| ||||| || | |||||| |||| |||||| ||||| |||||| || |||||||| |||||||| | ||||||||| |
|
|
| T |
5071398 |
ggtgaagtgtcctccaggtctggtccaatattggcaggaagtggattctttgaagcaaaaataagtggaaagggaggtcatgcagctattcctcaacaat |
5071299 |
T |
|
| Q |
142 |
ctattgaccccattttggcggcttcgaatgtgattgttagcttacaacatatcgtttctcgcgaggctgatccccttgacacccaggtaaa |
232 |
Q |
| |
|
|||| || ||||| || || ||||| || |||| ||||| |||| || | |||||||||||||||||||| | ||| |||||||||| |
|
|
| T |
5071298 |
ctatagatcccatattagcagcttctggtgcgattattagcctacagcaccttgtttctcgcgaggctgatcctttagactcccaggtaaa |
5071208 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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