View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1511_low_201 (Length: 217)
Name: NF1511_low_201
Description: NF1511
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1511_low_201 |
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Alignment Details
Target: chr1 (Bit Score: 191; Significance: 1e-104; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 207
Target Start/End: Original strand, 47923709 - 47923915
Alignment:
| Q |
1 |
tatggaagaataaccaaaagacatgactgcagcaagaatagagagccaggagagttcatggaaatctgggatttggcttagtaaaatctctgtaacccca |
100 |
Q |
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| T |
47923709 |
tatggaagaataaccaaaagacatgactgcagcaagaatagagagccaggagagttcatggaaatctgggatttggcttagtaaaatctctgtaacccca |
47923808 |
T |
|
| Q |
101 |
aagatgaccataaattgataattggatattttgcaatccgcttcatgaccatacttatgaaagcagttggattttttcattgccctggttcataaacaag |
200 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||| ||| |
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| T |
47923809 |
aagatggccataaattgataattggatattttgcaatccgcttcatgaccatacttatgaaagcagttggatttttttattgccctggttcagaaataag |
47923908 |
T |
|
| Q |
201 |
caagtat |
207 |
Q |
| |
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||||||| |
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| T |
47923909 |
caagtat |
47923915 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 1 - 204
Target Start/End: Original strand, 47902571 - 47902774
Alignment:
| Q |
1 |
tatggaagaataaccaaaagacatgactgcagcaagaatagagagccaggagagttcatggaaatctgggatttggcttagtaaaatctctgtaacccca |
100 |
Q |
| |
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|||||||| |||||||||||||||||| |||||||||||||||||||| || ||||||||||||||||| ||| |||||||||||||||| || || |
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| T |
47902571 |
tatggaagcataaccaaaagacatgacggcagcaagaatagagagccatgaaagttcatggaaatctggaattaggcttagtaaaatctcaacaattccg |
47902670 |
T |
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| Q |
101 |
aagatgaccataaattgataattggatattttgcaatccgcttcatgaccatacttatgaaagcagttggattttttcattgccctggttcataaacaag |
200 |
Q |
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| T |
47902671 |
aagatggccataaatttatagttggatatcttgcagtccgccaaatggccttccttatgaaagcaattcgatttttttatggccctggttcagaaacaag |
47902770 |
T |
|
| Q |
201 |
caag |
204 |
Q |
| |
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|||| |
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| T |
47902771 |
caag |
47902774 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 176
Target Start/End: Original strand, 47917451 - 47917626
Alignment:
| Q |
1 |
tatggaagaataaccaaaagacatgactgcagcaagaatagagagccaggagagttcatggaaatctgggatttggcttagtaaaatctctgtaacccca |
100 |
Q |
| |
|
|||||||| ||||||||||||||||| ||||||| |||||||||||| || ||||||||||| | || ||||| |||||||||||||| | ||| |
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| T |
47917451 |
tatggaagcataaccaaaagacatgatggcagcaacaatagagagccatgaaagttcatggaagttgggaatttgacttagtaaaatctcaaagattcca |
47917550 |
T |
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| Q |
101 |
aagatgaccataaattgataattggatattttgcaatccgcttcatgaccatacttatgaaagcagttggattttt |
176 |
Q |
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| T |
47917551 |
aagatggccataaattgatagtttgttgtactgcagtcagcttcatgaccatacttatgaaagcaattgcattttt |
47917626 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 207
Target Start/End: Original strand, 47909250 - 47909456
Alignment:
| Q |
1 |
tatggaagaataaccaaaagacatgactgcagcaagaatagagagccaggagagttcatggaaatctgggatttggcttagtaaaatctctgtaacc--c |
98 |
Q |
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|||||||| ||||||||||||||||| ||||||| |||||||||||| || ||||||||||||||||| |||||||| ||||||| |||| || | | |
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| T |
47909250 |
tatggaagcataaccaaaagacatgatggcagcaacaatagagagccatgaaagttcatggaaatctggaatttggctcagtaaaa--tctgaaagcttc |
47909347 |
T |
|
| Q |
99 |
caaagatgaccataaattgataattggatattttgcaatccgcttcatgaccatacttatgaaagcagttggattttttcattgccctggttcataaaca |
198 |
Q |
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|||| ||| |||||||| | | |||||||| ||||| ||||| ||| || | |||||||||||| |||||||| | ||||||||||| || ||||| |
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| T |
47909348 |
caaaaatggccataaatgtaaagttggatatattgcagtccgccaaatgccctttcttatgaaagcaattggatttacttattgccctggtacaaaaaca |
47909447 |
T |
|
| Q |
199 |
agcaagtat |
207 |
Q |
| |
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||| |||| |
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| T |
47909448 |
tgcaggtat |
47909456 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 47898082 - 47898170
Alignment:
| Q |
1 |
tatggaagaataaccaaaagacatgactgcagcaagaatagagagccaggagagttcatggaaatctgggatttggcttagtaaaatct |
89 |
Q |
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|||||||| ||||||||||||||||| ||||||| |||||||||||| || ||||||||||||| ||| ||||||||||||||||||| |
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| T |
47898082 |
tatggaagcataaccaaaagacatgatggcagcaacaatagagagccatgaaagttcatggaaatatggaatttggcttagtaaaatct |
47898170 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 126 - 158
Target Start/End: Complemental strand, 47924660 - 47924628
Alignment:
| Q |
126 |
atattttgcaatccgcttcatgaccatacttat |
158 |
Q |
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||||||||||||||| ||||||||||||||||| |
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| T |
47924660 |
atattttgcaatccgtttcatgaccatacttat |
47924628 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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