View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1511_low_23 (Length: 532)
Name: NF1511_low_23
Description: NF1511
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1511_low_23 |
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Alignment Details
Target: chr1 (Bit Score: 504; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 504; E-Value: 0
Query Start/End: Original strand, 11 - 518
Target Start/End: Complemental strand, 1197354 - 1196847
Alignment:
| Q |
11 |
aatatcatcaccatgtcaatggatcaaaagaaatctaacaaaattagagaaattgttagacttcaacagatccttaagaaatggagaaaaatagcaaact |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1197354 |
aatatcatcaccatgtcaatggatcaaaagaaatctaacaaaattagagaaattgttagacttcaacagatccttaagaaatggagaaaaatagcaaact |
1197255 |
T |
|
| Q |
111 |
catcaaaaaccacagccaacaccaccaccatcactagaagcaaaagcatgaagtttctaaaaagaacactttctctttctgaacgtgaaggaggaacaac |
210 |
Q |
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| T |
1197254 |
catcaaaaaccacagccaacaccaccaccatcactagaagcaaaagcatgaagtttctaaaaagaacactttctctttctgaacgtgaaggaggaacaac |
1197155 |
T |
|
| Q |
211 |
atcatcaaacaacaatggttctgttccaaaagggtatttagctgtttgtgttggagaagagcttaagaggttcatcataccaactgaatatttgggtcat |
310 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1197154 |
atcatcaaacaacaatggttctgttccaaaaggatatttagctgtttgtgttggagaagagcttaagaggttcatcataccaactgaatatttgggtcat |
1197055 |
T |
|
| Q |
311 |
caagcttttcagattcttttgagagaagctgaagaagaatttgggtttcaacaagctggtgtattgaggattccttgtgaagtctctacttttgagagta |
410 |
Q |
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| T |
1197054 |
caagcttttcagattcttttgagagaagctgaagaagaatttgggtttcaacaagctggtgtattgaggattccttgtgaagtctctacttttgagagta |
1196955 |
T |
|
| Q |
411 |
ttttgaagatggttgaagatcatggaaagaataaggacaagttttcaaatcaagaatgtagatcaattagcattgaagagatgatgggttattgttcttt |
510 |
Q |
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| T |
1196954 |
ttttgaagatggttgaagatcatggaaagaataaggacaagttttcaaatcaagaatgtagatcaattagcattgaagagatgatgggttattgttcttt |
1196855 |
T |
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| Q |
511 |
agaaaatc |
518 |
Q |
| |
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|||||||| |
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| T |
1196854 |
agaaaatc |
1196847 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 329; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 14 - 517
Target Start/End: Original strand, 7289231 - 7289732
Alignment:
| Q |
14 |
atcatcaccatgtcaatggatcaaaagaaatctaacaaaattagagaaattgttagacttcaacagatccttaagaaatggagaaaaatagcaaactcat |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||| |||||| | |||||||| ||||| || |
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| T |
7289231 |
atcatcaccatgtcaatggatcaaaagaaatctaacaaaattagagaaatcgttagacttcaacaaatcctta-gaaatgaaaaaaaatagaaaacttat |
7289329 |
T |
|
| Q |
114 |
caaaaaccacagccaacaccaccaccatcactagaagcaaaagcatgaagtttctaaaaagaacactttctctttctgaacgtgaaggaggaacaacatc |
213 |
Q |
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| ||| | | ||||||||| |||||||| || |||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||| |||||| |
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| T |
7289330 |
-acaaattaaa-ccaacaccaacaccatcaataaaagcaaaatcatgaagtttctaaaaagaacactttctctatctgaacgtgaaggaggaataacatc |
7289427 |
T |
|
| Q |
214 |
atcaaacaacaatggttctgttccaaaagggtatttagctgtttgtgttggagaagagcttaagaggttcatcatacca---actgaatatttgggtcat |
310 |
Q |
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|||||| |||||||||| ||| | |||||||||||||||||||||| |||||||||| ||||||||||||||||||||| |||||||||||| ||||| |
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| T |
7289428 |
atcaaagaacaatggttatgtcctaaaagggtatttagctgtttgtattggagaagaacttaagaggttcatcataccaccaactgaatatttgtgtcat |
7289527 |
T |
|
| Q |
311 |
caagcttttcagattcttttgagagaagctgaagaagaatttgggtttcaacaagctggtgtattgaggattccttgtgaagtctctacttttgagagta |
410 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||| ||| |
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| T |
7289528 |
caagcttttcagattcttttgagagaagctgaagaagaatttgggtttcaacaagctggtgttttgaggattctttgtgaagtctctacttttgagtgta |
7289627 |
T |
|
| Q |
411 |
ttttgaagatggttgaagatcatggaaagaataaggacaagttttcaaatcaagaatgtagatcaattagcattgaagagatgatgggttattgttcttt |
510 |
Q |
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| T |
7289628 |
ttttgaagatggttgaagatcatggaaagaataagga-tagtgttcaaa-caagaatgtagatcaattggcattgaagaaatgatgagttattgttcttt |
7289725 |
T |
|
| Q |
511 |
agaaaat |
517 |
Q |
| |
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||||||| |
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| T |
7289726 |
agaaaat |
7289732 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 64; Significance: 1e-27; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 249 - 428
Target Start/End: Original strand, 50471139 - 50471318
Alignment:
| Q |
249 |
tagctgtttgtgttggagaagagcttaagaggttcatcataccaactgaatatttgggtcatcaagcttttcagattcttttgagagaagctgaagaaga |
348 |
Q |
| |
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|||| ||||||||||| | ||| ||||| ||||| | |||||||| || ||||||| ||||||||| ||||| || | | ||||||||||||||||| |
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| T |
50471139 |
tagccgtttgtgttggtgtagaccttaacaggtttgttataccaaccgagtatttggctcatcaagcctttcatatattactcagagaagctgaagaaga |
50471238 |
T |
|
| Q |
349 |
atttgggtttcaacaagctggtgtattgaggattccttgtgaagtctctacttttgagagtattttgaagatggttgaag |
428 |
Q |
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|||||||||| ||||| ||||||| |||| |||||||||||||| || ||||||||||| |||||||||||||||| |
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| T |
50471239 |
atttgggtttgaacaaactggtgttctgagaattccttgtgaagtttcagtgtttgagagtatcttgaagatggttgaag |
50471318 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 37 - 98
Target Start/End: Original strand, 50470930 - 50470991
Alignment:
| Q |
37 |
aaagaaatctaacaaaattagagaaattgttagacttcaacagatccttaagaaatggagaa |
98 |
Q |
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||||||| |||||||||| |||||||| |||||||||||||||||||||||||||||||||| |
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| T |
50470930 |
aaagaaacctaacaaaatcagagaaatcgttagacttcaacagatccttaagaaatggagaa |
50470991 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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