View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1511_low_24 (Length: 527)

Name: NF1511_low_24
Description: NF1511
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1511_low_24
NF1511_low_24
[»] chr3 (27 HSPs)
chr3 (338-522)||(6510719-6510898)
chr3 (49-168)||(6950472-6950591)
chr3 (16-114)||(6750022-6750118)
chr3 (435-522)||(6749761-6749848)
chr3 (81-171)||(7576039-7576132)
chr3 (16-114)||(6471622-6471718)
chr3 (343-522)||(6418235-6418422)
chr3 (434-522)||(7575869-7575957)
chr3 (435-522)||(6471896-6471983)
chr3 (81-155)||(6551882-6551959)
chr3 (353-435)||(6822405-6822487)
chr3 (303-388)||(7575998-7576085)
chr3 (338-435)||(7588803-7588897)
chr3 (82-164)||(7588924-7589003)
chr3 (259-307)||(6822263-6822311)
chr3 (343-407)||(6471782-6471845)
chr3 (343-407)||(6749899-6749962)
chr3 (108-164)||(8473596-8473652)
chr3 (35-141)||(6510530-6510635)
chr3 (50-137)||(6822172-6822261)
chr3 (466-522)||(6823137-6823193)
chr3 (165-208)||(6551996-6552039)
chr3 (303-346)||(6822325-6822368)
chr3 (55-96)||(6584577-6584618)
chr3 (303-346)||(6418173-6418216)
chr3 (457-513)||(6552242-6552299)
chr3 (435-464)||(6823088-6823117)
[»] scaffold0445 (3 HSPs)
scaffold0445 (217-307)||(8988-9076)
scaffold0445 (351-519)||(8722-8878)
scaffold0445 (303-345)||(8927-8969)
[»] scaffold2089 (1 HSPs)
scaffold2089 (216-435)||(695-909)
[»] scaffold0425 (5 HSPs)
scaffold0425 (81-155)||(4832-4909)
scaffold0425 (343-435)||(5072-5161)
scaffold0425 (165-208)||(4946-4989)
scaffold0425 (16-56)||(3733-3773)
scaffold0425 (462-513)||(5217-5269)


Alignment Details
Target: chr3 (Bit Score: 84; Significance: 1e-39; HSPs: 27)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 338 - 522
Target Start/End: Original strand, 6510719 - 6510898
Alignment:
Q  338 ctttctttgttctactcactttcaagtaatttctctctttaaatcttagtagtaaacacattttttactctttatttccatttgtactcaaatttcattt 437  Q
    |||| ||||||| |||||||||||||||||||||||||||||||||   || ||||||||||||||||||||||||||| ||| |||||||||||||  |    
T  6510719 ctttgtttgttccactcactttcaagtaatttctctctttaaatct---tactaaacacattttttactctttatttccgtttttactcaaatttca--t 6510813  T
Q  438 atattgcctctaaatctttctctatttccttagcagatctcagattgtgtttttgtgacaaagatctcagtttgtttcttctcac 522  Q
    || |  | | |   |  | || ||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  6510814 atttcacattttttttatactttatttccttggcagatctcagtttgtgtttttgtgacaaagatctcagtttgtttcttctcac 6510898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 49 - 168
Target Start/End: Complemental strand, 6950591 - 6950472
Alignment:
Q  49 atgttcaatcagttgatccagaaaggtacattatctcattcattttctacttcttactttctcttccataccaaacttcatctttcatatcttattctgc 148  Q
    |||||||||||||||||| | ||||||||||||||||||||||||||||| ||||| |||||||||||||  |||||||||| || ||||||| || |||    
T  6950591 atgttcaatcagttgatcaaaaaaggtacattatctcattcattttctacatcttattttctcttccatatgaaacttcatcattgatatcttgttgtgc 6950492  T
Q  149 ttcctctaagtatttctttg 168  Q
    |||||||||||  |||||||    
T  6950491 ttcctctaagtccttctttg 6950472  T

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Target: chr3; HSP #3
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 16 - 114
Target Start/End: Complemental strand, 6750118 - 6750022
Alignment:
Q  16 ctattgtgtggtgtggaggaaagacgcgtatacatgttcaatcagttgatccagaaaggtacattatctcattcattttctacttcttactttctcttc 114  Q
    ||||||||||||||| || ||||||||||||| ||||||||||||||||| || |||  ||||||||||||||||||||||||||||||||||||||||    
T  6750118 ctattgtgtggtgtgtag-aaagacgcgtatatatgttcaatcagttgatacaaaaat-tacattatctcattcattttctacttcttactttctcttc 6750022  T

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Target: chr3; HSP #4
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 435 - 522
Target Start/End: Complemental strand, 6749848 - 6749761
Alignment:
Q  435 tttatattgcctctaaatctttctctatttccttagcagatctcagattgtgtttttgtgacaaagatctcagtttgtttcttctcac 522  Q
    |||||||||||||||||| ||| | ||||||||| ||||||||||| ||||||||||| ||||||||||||| ||||||| |||||||    
T  6749848 tttatattgcctctaaatatttttttatttccttggcagatctcagcttgtgtttttgagacaaagatctcaatttgtttgttctcac 6749761  T

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Target: chr3; HSP #5
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 81 - 171
Target Start/End: Complemental strand, 7576132 - 7576039
Alignment:
Q  81 atctcattcattttctacttcttactttctcttccata---ccaaacttcatctttcatatcttattctgcttcctctaagtatttctttgttc 171  Q
    |||||||||||||||||| |||||||||||||||||||   |||||||||||||||||||||||  | |||||||||||| | |||||||||||    
T  7576132 atctcattcattttctacatcttactttctcttccataataccaaacttcatctttcatatcttgctgtgcttcctctaactctttctttgttc 7576039  T

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Target: chr3; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 16 - 114
Target Start/End: Original strand, 6471622 - 6471718
Alignment:
Q  16 ctattgtgtggtgtggaggaaagacgcgtatacatgttcaatcagttgatccagaaaggtacattatctcattcattttctacttcttactttctcttc 114  Q
    ||||||||||||||| || ||||||||| ||| ||||||||||||||||| || |||  | ||||||||||||||||||||||||||||||||||||||    
T  6471622 ctattgtgtggtgtgtag-aaagacgcgaatatatgttcaatcagttgatacaaaaat-tgcattatctcattcattttctacttcttactttctcttc 6471718  T

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Target: chr3; HSP #7
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 343 - 522
Target Start/End: Original strand, 6418235 - 6418422
Alignment:
Q  343 tttgttctactcactttcaagtaatttctctctttaaatcttagtagtaaacacattttttactctttatttccatttgtactcaaatttca-------- 434  Q
    ||||||| || |||||| |||||||||||||||||| ||||   ||||||||||| ||||||||||| |||||||||  |||||||||||||            
T  6418235 tttgttccacacactttaaagtaatttctctctttagatct---tagtaaacaca-tttttactcttaatttccattgttactcaaatttcatatttcac 6418330  T
Q  435 ----tttatattgcctctaaatctttctctatttccttagcagatctcagattgtgtttttgtgacaaagatctcagtttgtttcttctcac 522  Q
        ||||||||||||||||||  |||||||||||||| |||||||| || ||||| |||  || ||||||||||| | ||||| |||||||    
T  6418331 atattttatattgcctctaaatagttctctatttccttggcagatctaagtttgtgctttactgtcaaagatctcaatctgtttgttctcac 6418422  T

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Target: chr3; HSP #8
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 434 - 522
Target Start/End: Complemental strand, 7575957 - 7575869
Alignment:
Q  434 atttatattgcctctaaatctttctctatttccttagcagatctcagattgtgtttttgtgacaaagatctcagtttgtttcttctcac 522  Q
    |||| |||||||||||||||||||| |||||||||  |||||||||| || ||||||||| |||||||||||| ||||||| |||||||    
T  7575957 atttttattgcctctaaatctttctatatttccttgtcagatctcagtttttgtttttgtcacaaagatctcaatttgtttgttctcac 7575869  T

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Target: chr3; HSP #9
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 435 - 522
Target Start/End: Original strand, 6471896 - 6471983
Alignment:
Q  435 tttatattgcctctaaatctttctctatttccttagcagatctcagattgtgtttttgtgacaaagatctcagtttgtttcttctcac 522  Q
    |||||||||||||||||| ||| | ||||||||| ||||||||||| ||||||| ||| ||||||||||||| ||||||| |||||||    
T  6471896 tttatattgcctctaaatatttttttatttccttggcagatctcagcttgtgttcttgagacaaagatctcaatttgtttgttctcac 6471983  T

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Target: chr3; HSP #10
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 81 - 155
Target Start/End: Original strand, 6551882 - 6551959
Alignment:
Q  81 atctcattcattttctacttcttactttctcttcc---ataccaaacttcatctttcatatcttattctgcttcctct 155  Q
    |||||||| |||||||||||||||||||||||||    |||||||||||||||||||||||||||||||| |||||||    
T  6551882 atctcattgattttctacttcttactttctcttctttgataccaaacttcatctttcatatcttattctgtttcctct 6551959  T

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Target: chr3; HSP #11
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 353 - 435
Target Start/End: Original strand, 6822405 - 6822487
Alignment:
Q  353 tcactttcaagtaatttctctctttaaatcttagtagtaaacacattttttactctttatttccatttgtactcaaatttcat 435  Q
    ||||||||||||||||||||||||| |||||||||||||||||||| |||||||||  |||||| ||| | ||||||| ||||    
T  6822405 tcactttcaagtaatttctctctttgaatcttagtagtaaacacatattttactctaaatttccgtttttgctcaaatctcat 6822487  T

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Target: chr3; HSP #12
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 303 - 388
Target Start/End: Complemental strand, 7576085 - 7575998
Alignment:
Q  303 ttcatcattgatatcttgcattgcttcctctaagtctttctttgttctactcactttcaagtaa--tttctctctttaaatcttagta 388  Q
    |||||| || |||||||||  |||||||||||| |||||||||||||||| |||||||||||||  | ||||||||||||||||||||    
T  7576085 ttcatctttcatatcttgctgtgcttcctctaactctttctttgttctacccactttcaagtaatctctctctctttaaatcttagta 7575998  T

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Target: chr3; HSP #13
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 338 - 435
Target Start/End: Complemental strand, 7588897 - 7588803
Alignment:
Q  338 ctttctttgttctactcactttcaagtaatttctctctttaaatcttagtagtaaacacattttttactctttatttccatttgtactcaaatttcat 435  Q
    ||||| |||||| ||||||||||||||||||||||||||||||   || ||||| |||| |||||||||||| |||||| ||  ||||||||||||||    
T  7588897 ctttcattgttccactcactttcaagtaatttctctctttaaa---tattagtacacacgttttttactcttaatttccgttgttactcaaatttcat 7588803  T

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Target: chr3; HSP #14
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 82 - 164
Target Start/End: Complemental strand, 7589003 - 7588924
Alignment:
Q  82 tctcattcattttcta-cttcttactttctcttccataccaaacttcatctttcatatcttattctgcttcctctaagtatttc 164  Q
    |||||||||||||||| |||||||||    ||||||||||||||||||||||| ||||||| ||||||||||||||||| ||||    
T  7589003 tctcattcattttctaacttcttact----cttccataccaaacttcatctttgatatcttgttctgcttcctctaagtctttc 7588924  T

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Target: chr3; HSP #15
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 259 - 307
Target Start/End: Original strand, 6822263 - 6822311
Alignment:
Q  259 cagttgatacaaaaaagcaaaccattcactttcttcttcttaatttcat 307  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||    
T  6822263 cagttgatacaaaaaagcaaaccattcattttcttcttcttaatttcat 6822311  T

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Target: chr3; HSP #16
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 343 - 407
Target Start/End: Original strand, 6471782 - 6471845
Alignment:
Q  343 tttgttctactcactttcaagtaatttctctctttaaatcttagtagtaaacacattttttactc 407  Q
    |||||||||| |||||||| |||||||||||||||||||| |  |||||||||||||||||||||    
T  6471782 tttgttctacacactttcatgtaatttctctctttaaatc-tcttagtaaacacattttttactc 6471845  T

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Target: chr3; HSP #17
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 343 - 407
Target Start/End: Complemental strand, 6749962 - 6749899
Alignment:
Q  343 tttgttctactcactttcaagtaatttctctctttaaatcttagtagtaaacacattttttactc 407  Q
    |||||||||| |||||||| |||||||||||||||||||| |  |||||||||||||||||||||    
T  6749962 tttgttctacacactttcatgtaatttctctctttaaatc-tcttagtaaacacattttttactc 6749899  T

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Target: chr3; HSP #18
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 108 - 164
Target Start/End: Complemental strand, 8473652 - 8473596
Alignment:
Q  108 tctcttccataccaaacttcatctttcatatcttattctgcttcctctaagtatttc 164  Q
    ||||||||||||||||||||||  || ||||||||||||||||||||||||| ||||    
T  8473652 tctcttccataccaaacttcatgattgatatcttattctgcttcctctaagtctttc 8473596  T

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Target: chr3; HSP #19
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 35 - 141
Target Start/End: Original strand, 6510530 - 6510635
Alignment:
Q  35 aaagacgcgtatacatgttcaatcagttgatccagaaaggtacattatctcattcattttctacttcttactttct-cttccataccaaacttcatcttt 133  Q
    |||||||||| || || |||||||||||||| || |||| || || |||||||||||||| | ||||| ||||||| |||  ||||||||||||||||||    
T  6510530 aaagacgcgt-tatatattcaatcagttgatacaaaaag-tatatcatctcattcattttttccttctcactttcttctttgataccaaacttcatcttt 6510627  T
Q  134 catatctt 141  Q
    ||||||||    
T  6510628 catatctt 6510635  T

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Target: chr3; HSP #20
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 50 - 137
Target Start/End: Original strand, 6822172 - 6822261
Alignment:
Q  50 tgttcaatcagttgatccagaaaggtacattatctcattcattttctacttcttactttctcttc---cataccaaacttcatctttcata 137  Q
    |||||||||||||||| || |||| || || ||| |||||||||| ||||||| |||||||||||    ||||||||||||||||||||||    
T  6822172 tgttcaatcagttgatacaaaaag-taaatcatcgcattcattttttacttctcactttctcttctttgataccaaacttcatctttcata 6822261  T

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Target: chr3; HSP #21
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 466 - 522
Target Start/End: Original strand, 6823137 - 6823193
Alignment:
Q  466 cttagcagatctcagattgtgtttttgtgacaaagatctcagtttgtttcttctcac 522  Q
    ||||||||||||||| ||||||||||  |||||||||||||| |||||| |||||||    
T  6823137 cttagcagatctcagtttgtgtttttccgacaaagatctcagattgtttgttctcac 6823193  T

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Target: chr3; HSP #22
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 165 - 208
Target Start/End: Original strand, 6551996 - 6552039
Alignment:
Q  165 tttgttccacttactatctatatcaaactcatcattgatatctt 208  Q
    |||||||||||||||||| |||| ||||||||||||||||||||    
T  6551996 tttgttccacttactatccatatgaaactcatcattgatatctt 6552039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 303 - 346
Target Start/End: Original strand, 6822325 - 6822368
Alignment:
Q  303 ttcatcattgatatcttgcattgcttcctctaagtctttctttg 346  Q
    ||||||||| |||| |||||||||||||||||||||||||||||    
T  6822325 ttcatcattaatattttgcattgcttcctctaagtctttctttg 6822368  T

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Target: chr3; HSP #24
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 55 - 96
Target Start/End: Original strand, 6584577 - 6584618
Alignment:
Q  55 aatcagttgatccagaaaggtacattatctcattcattttct 96  Q
    ||||||||||| || |||||||||||||||||||||||||||    
T  6584577 aatcagttgatacaaaaaggtacattatctcattcattttct 6584618  T

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Target: chr3; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 303 - 346
Target Start/End: Original strand, 6418173 - 6418216
Alignment:
Q  303 ttcatcattgatatcttgcattgcttcctctaagtctttctttg 346  Q
    ||||||||||||||||||   |||||||||||||||||||||||    
T  6418173 ttcatcattgatatcttgttgtgcttcctctaagtctttctttg 6418216  T

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Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 457 - 513
Target Start/End: Original strand, 6552242 - 6552299
Alignment:
Q  457 ctctatttccttagcagatctcagattgtgtttttg-tgacaaagatctcagtttgtt 513  Q
    |||| ||||||| ||||||||||| |||| ||| || |||||||||||||||||||||    
T  6552242 ctctctttccttggcagatctcagtttgtatttgtgctgacaaagatctcagtttgtt 6552299  T

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Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 435 - 464
Target Start/End: Original strand, 6823088 - 6823117
Alignment:
Q  435 tttatattgcctctaaatctttctctattt 464  Q
    ||||||||||||||||||||||||||||||    
T  6823088 tttatattgcctctaaatctttctctattt 6823117  T

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Target: scaffold0445 (Bit Score: 60; Significance: 2e-25; HSPs: 3)
Name: scaffold0445
Description:

Target: scaffold0445; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 217 - 307
Target Start/End: Complemental strand, 9076 - 8988
Alignment:
Q  217 tgtgcttcctctaaatctatccatattatatatatgctcagtcagttgatacaaaaaagcaaaccattcactttcttcttcttaatttcat 307  Q
    |||||||||||||| ||||||||||||||||||  | |||||||||||||| ||||||||| |||||||| ||||||||||||||||||||    
T  9076 tgtgcttcctctaagtctatccatattatatat--ggtcagtcagttgatagaaaaaagcacaccattcattttcttcttcttaatttcat 8988  T

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Target: scaffold0445; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 351 - 519
Target Start/End: Complemental strand, 8878 - 8722
Alignment:
Q  351 actcactttcaagtaatttctctctttaaatcttagtagtaaacacattttttactctttatttccatttgtactcaaatttcatttatattgcctctaa 450  Q
    |||||||||||||||||||||||||||||||||    ||||||||||| |||||||||| |||||| ||  ||||||||||||    ||||| |    |     
T  8878 actcactttcaagtaatttctctctttaaatct---cagtaaacacatattttactcttaatttccgttgttactcaaatttc----atatttc----ac 8790  T
Q  451 atctttctctatttccttagcagatctcagattgtgtttttgtgacaaagatctcagtttgtttcttct 519  Q
    || ||| | ||||||||| ||||||||||| ||||||||||||||||||||||||| ||| ||| ||||    
T  8789 at-tttttatatttccttggcagatctcagtttgtgtttttgtgacaaagatctcaatttatttgttct 8722  T

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Target: scaffold0445; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 303 - 345
Target Start/End: Complemental strand, 8969 - 8927
Alignment:
Q  303 ttcatcattgatatcttgcattgcttcctctaagtctttcttt 345  Q
    |||||| ||||||||||||||||||||| ||||||||||||||    
T  8969 ttcatcgttgatatcttgcattgcttccgctaagtctttcttt 8927  T

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Target: scaffold2089 (Bit Score: 58; Significance: 4e-24; HSPs: 1)
Name: scaffold2089
Description:

Target: scaffold2089; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 216 - 435
Target Start/End: Original strand, 695 - 909
Alignment:
Q  216 ttgtgcttcctctaaatctatccatattatatatatgctcagtcagttgatacaaaaaagcaaaccattcactttcttcttcttaatttcatcattgata 315  Q
    ||||||||||||||| ||||||||||||||||||  |||||||||||||||||              || | ||||||||||||||||||||||||||||    
T  695 ttgtgcttcctctaagtctatccatattatatat--gctcagtcagttgatacc-------------ttgattttcttcttcttaatttcatcattgata 779  T
Q  316 tcttgcattgcttcctctaagtctttcttt--------------gttctactcactttcaagtaatttctctctttaaatcttagtagtaaacacatttt 401  Q
    ||||| ||||||||||||||||||||||||              |||||||||||||||||||||||| ||| ||||| |||   || ||||||||||||    
T  780 tcttggattgcttcctctaagtctttctttgccagatctttcaagttctactcactttcaagtaatttttct-tttaagtct---taataaacacatttt 875  T
Q  402 ttactctttatttccatttgtactcaaatttcat 435  Q
    |||||||| |||| | ||  ||||||||||||||    
T  876 ttactcttaatttacgttgttactcaaatttcat 909  T

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Target: scaffold0425 (Bit Score: 48; Significance: 3e-18; HSPs: 5)
Name: scaffold0425
Description:

Target: scaffold0425; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 81 - 155
Target Start/End: Original strand, 4832 - 4909
Alignment:
Q  81 atctcattcattttctacttcttactttctcttcc---ataccaaacttcatctttcatatcttattctgcttcctct 155  Q
    |||||||| |||||||||||||||||||||||||    ||||||||||||||||||||||| |||||||| |||||||    
T  4832 atctcattgattttctacttcttactttctcttctttgataccaaacttcatctttcatatattattctgtttcctct 4909  T

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Target: scaffold0425; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 343 - 435
Target Start/End: Original strand, 5072 - 5161
Alignment:
Q  343 tttgttctactcactttcaagtaatttctctctttaaatcttagtagtaaacacattttttactctttatttccatttgtactcaaatttcat 435  Q
    ||||||| || ||||||||||||| || |||||||||||||||||   ||||||||||||||||||| |||||| ||  ||||||||||||||    
T  5072 tttgttccacacactttcaagtaacttatctctttaaatcttagt---aaacacattttttactcttaatttccgttgttactcaaatttcat 5161  T

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Target: scaffold0425; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 165 - 208
Target Start/End: Original strand, 4946 - 4989
Alignment:
Q  165 tttgttccacttactatctatatcaaactcatcattgatatctt 208  Q
    |||||||||||||||||| |||| ||||||||||||||||||||    
T  4946 tttgttccacttactatccatatgaaactcatcattgatatctt 4989  T

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Target: scaffold0425; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 16 - 56
Target Start/End: Original strand, 3733 - 3773
Alignment:
Q  16 ctattgtgtggtgtggaggaaagacgcgtatacatgttcaa 56  Q
    |||||| ||||||||||||||| ||||||||||| ||||||    
T  3733 ctattgggtggtgtggaggaaaaacgcgtatacaagttcaa 3773  T

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Target: scaffold0425; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 462 - 513
Target Start/End: Original strand, 5217 - 5269
Alignment:
Q  462 tttccttagcagatctcagattgtgtttttg-tgacaaagatctcagtttgtt 513  Q
    ||||||| ||||||||||| |||| ||| || |||||||||||||||||||||    
T  5217 tttccttggcagatctcagtttgtatttgtggtgacaaagatctcagtttgtt 5269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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