View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1511_low_25 (Length: 506)
Name: NF1511_low_25
Description: NF1511
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1511_low_25 |
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Alignment Details
Target: chr1 (Bit Score: 290; Significance: 1e-162; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 13 - 472
Target Start/End: Complemental strand, 29165913 - 29165448
Alignment:
| Q |
13 |
attatactctttgcggttttcgtcctaatattcccaattcattgattgaagatgtgacattagttcaggccgatcaaaagaaaagctttgaaatttcat- |
111 |
Q |
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| T |
29165913 |
attatactctttgcggttttcgtcctaatattcccaattcattgattgaagatgtgacattagttcaggccgatcaaaagaaaagctttgaaatttcata |
29165814 |
T |
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| Q |
112 |
--------------------tttctaagtaatgtgggacggctacaaactcaaccaattgagatacatattta----attatatagaagaaaagcttacc |
187 |
Q |
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| T |
29165813 |
tattgtttttggaatttcattttctaagtaatgtgggacggctacaaactcaaccaattgagatacatatttatttaattatatagaagaaaagcttacc |
29165714 |
T |
|
| Q |
188 |
gcacttccttttaatgcttaatgaagtacaatatgttaaataaatgattactttcttgcatttcaatggttatcaagtactattattannnnnnnnnnnn |
287 |
Q |
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| T |
29165713 |
gcacttccttttaatgcttaatgaagtacaatatgttaaataaatgattactttcttgcatttcaatggttatcaagtacttttttt----------ttt |
29165624 |
T |
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| Q |
288 |
nnnnnngggtagagtatcaagtactacgtattaagagggatatatgtacaatatgcactatgttgaatgaaataaatggttaacctagtcaatctcgtta |
387 |
Q |
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| T |
29165623 |
ttttttgggtagagtatcaagtactacgtattaagagggatatatgt---------actatgttgaatgaaataaatggttaacctagtcaatctcgtta |
29165533 |
T |
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| Q |
388 |
gaagatgttttgtctaataatatgtaaagtttattagctacttctattgaaagcataagtaacatggatttgcgatgcaatgctt |
472 |
Q |
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| T |
29165532 |
gaagatgttttgcctaataatatgtaaagtttattagccacttctattgaaagcataagtaacatggatttgcgatgcaatgctt |
29165448 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 388 - 429
Target Start/End: Complemental strand, 37302503 - 37302462
Alignment:
| Q |
388 |
gaagatgttttgtctaataatatgtaaagtttattagctact |
429 |
Q |
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| T |
37302503 |
gaagatgttttgcctaataagatgtagagtttattagctact |
37302462 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000007; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 390 - 438
Target Start/End: Original strand, 17968934 - 17968982
Alignment:
| Q |
390 |
agatgttttgtctaataatatgtaaagtttattagctacttctattgaa |
438 |
Q |
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| T |
17968934 |
agatgttttgtctaataacatgtagatcttattagctacttccattgaa |
17968982 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 390 - 438
Target Start/End: Complemental strand, 27908422 - 27908374
Alignment:
| Q |
390 |
agatgttttgtctaataatatgtaaagtttattagctacttctattgaa |
438 |
Q |
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| T |
27908422 |
agatgttttgcctaataatatgtagatcttattagctacttccattgaa |
27908374 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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