View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1511_low_26 (Length: 497)
Name: NF1511_low_26
Description: NF1511
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1511_low_26 |
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Alignment Details
Target: chr3 (Bit Score: 388; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 70 - 482
Target Start/End: Complemental strand, 49411176 - 49410764
Alignment:
| Q |
70 |
tagacgaatacaaagaagaggaaacgttgttcattgtagccaaccatacaaagcgaaaagcaacatggccaagaaaattagcattcatgttcttaacaac |
169 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49411176 |
tagacgaatacaaagaagaggaaacgttgttcattgtagccaaccatacaaagcgaaaagcaacatggccaagaaaattagcattcatgttcttaacaac |
49411077 |
T |
|
| Q |
170 |
aactcctcttccatttgcttcattatgggaatcttacttcaaccaaatcccnnnnnnnttgtacaatatctacattcatgctgacccaacattctcttac |
269 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
49411076 |
aactcctcttccatttgcttcattatgggaatcttacttcaaccaaatcccaaaaaaattgtacaatatctacattcatgctgacccaacattctcttac |
49410977 |
T |
|
| Q |
270 |
gaccctcctttttctggtgttttctcaaaccgtatcattccttcaaaaccaacagctagattctcccccactctcacctcagcggctcgtcgattagtcg |
369 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
49410976 |
gaccctcctttttctggtgttttctcaaaccgtatcattccttcaaaaccaacagctagattctcccccactctcacctcagcggcgcgtcgattagtcg |
49410877 |
T |
|
| Q |
370 |
cacgggctctcatcgacgatcgttcaaattacattttcatccttctatcctcttcttgcattcctcttcactccttcaatttcacttaccacactcttat |
469 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49410876 |
cacgggctctcatcgacgatcgttcaaattacattttcatccttctatcctcttcttgcattcctcttcactccttcaatttcacttaccacactcttat |
49410777 |
T |
|
| Q |
470 |
taactcaaacaaa |
482 |
Q |
| |
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||||||||||||| |
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| T |
49410776 |
taactcaaacaaa |
49410764 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 49411245 - 49411211
Alignment:
| Q |
1 |
caaacctcacaaccactttcttaagtataaatact |
35 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
49411245 |
caaacctcacaaccactttcttaagtataaatact |
49411211 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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