View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1511_low_28 (Length: 486)
Name: NF1511_low_28
Description: NF1511
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1511_low_28 |
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| [»] scaffold0039 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 361; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 15 - 476
Target Start/End: Original strand, 40389275 - 40389729
Alignment:
| Q |
15 |
attctattcttagcaagttatcgttattaaacttgatcttgaagaggcaaagaaaatataaagaaataggaaacgagtagggtatcaatgccatgttttt |
114 |
Q |
| |
|
|||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
40389275 |
attctattcttagcaagtgatcgttattacacttgatcttgaagaggcaaagaaaatataaagaaataggaaacgagtagggtatcaatgccatgttttt |
40389374 |
T |
|
| Q |
115 |
caactgccagttttgcgatatggaaatgggaacattttggtggcagtgaagaaatcacaaagcagtcggtgcgtggtggctaagtttttaactaggagat |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||| |
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|
| T |
40389375 |
caactgccagttttgcgatatggaaatggggacattttggtggcagtgaagaaatcacaaagcagtcggtgcgtgg-ggctaagtttttaactagaagat |
40389473 |
T |
|
| Q |
215 |
ggcggtggttgtgctatgttgatggcgcggtacggcagatgcggttactaagaaaactttcatcttctttcttctcttcagaaaaggtagatactgctct |
314 |
Q |
| |
|
||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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|
| T |
40389474 |
ggcggtggtcatgctatgttgatggcgcggtacggtagatgcggttactaagaaaactttcatgttctttcttctcttcagaaaaggtagatactgctct |
40389573 |
T |
|
| Q |
315 |
tctctcaataaggatgtaagtctttttgttcgggttacannnnnnnatctattcttatttggctattatgttatgtccatggtagcagacacaccattct |
414 |
Q |
| |
|
||||||||||| ||| ||||||||||||| ||||||||| |||||||||||| |||||| |||||||||||||||||||||||||||||| |
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| T |
40389574 |
tctctcaataa-gatataagtctttttgtccgggttacatttttttatctattcttatatggcta-----ttatgtccatggtagcagacacaccattct |
40389667 |
T |
|
| Q |
415 |
tgatgaggtcaagatattggaatcacatggagcaataaatattttattgggtcatccttcat |
476 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
40389668 |
tgatgaggtcaagatattggaatcacatggagcaataaatattttattgggtcatccttcat |
40389729 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 15 - 448
Target Start/End: Original strand, 29633344 - 29633770
Alignment:
| Q |
15 |
attctattcttagcaagttatcgttattaaacttgatcttgaagaggcaaagaaaatataaagaaataggaaacgagtagggtatcaatgccatgttttt |
114 |
Q |
| |
|
|||||||||||||||||| |||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
29633344 |
attctattcttagcaagtgatcgttattacacttggtcttgaagaggcaaagaaaatataaagaaataggaaacgagtagggtatcaatgccatgttttt |
29633443 |
T |
|
| Q |
115 |
caactgccagttttgcgatatggaaatgggaacattttggtggcagtgaagaaatcacaaagcagtcggtgcgtggtggctaagtttttaactaggagat |
214 |
Q |
| |
|
|||||||||||||||||||| ||||||||| | ||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||| |
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|
| T |
29633444 |
caactgccagttttgcgatagggaaatggggatattttggtggcagtgaagaaatcacaaagcagtcggtgcatgggggctaagtttttaactaggagat |
29633543 |
T |
|
| Q |
215 |
ggcggtggttgtgctatgttgatggcgcggtacggcagatgcggttactaagaaaactttcatcttctttcttctcttcagaaaaggtagatactgctct |
314 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| || ||| |
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|
| T |
29633544 |
ggcggtggtcctgctatgttgatggcgcggtacggcatatgcggttactaagaaaactttcatgttctttcttctcttcagaaaaggcagatattgttct |
29633643 |
T |
|
| Q |
315 |
tctctcaataaggatgtaagtctttttgttcgggttacannnnnnnatctattcttatttggctattatgttatgtccatggtagcagacacaccattct |
414 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||| || | |||||||||||||| ||||||| |
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|
| T |
29633644 |
tctctcaataag-atgtaagtctttttgttcgggttacatttttttatctattcttatttggctattacgt-----ctatggtagcagacac-ccattct |
29633736 |
T |
|
| Q |
415 |
tgatgaggtcaagatattggaatcacatggagca |
448 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
29633737 |
tgatgaggtcaagatattggaatcacatggagca |
29633770 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 146 - 232
Target Start/End: Complemental strand, 44339084 - 44338997
Alignment:
| Q |
146 |
acattttggtggcagtgaagaaatcacaaagcagtcggtgc-gtggtggctaagtttttaactaggagatggcggtggttgtgctatg |
232 |
Q |
| |
|
|||||| |||||| ||||||| |||||||| ||||| ||| |||| || ||||||||||| ||||||||||||||| |||||||| |
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|
| T |
44339084 |
acatttcggtggctttgaagaagtcacaaagtagtcgatgcagtgggggacaagtttttaaccaggagatggcggtggacgtgctatg |
44338997 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 153 - 232
Target Start/End: Original strand, 45533105 - 45533185
Alignment:
| Q |
153 |
ggtggcagtgaagaaatcacaaagcagtcggtgcg-tggtggctaagtttttaactaggagatggcggtggttgtgctatg |
232 |
Q |
| |
|
||||| ||||||||| |||||||| |||||||||| | | ||| |||||| ||||| | ||||||||||| || ||||||| |
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|
| T |
45533105 |
ggtggtagtgaagaagtcacaaagtagtcggtgcggtaggggccaagtttctaactggaagatggcggtgattatgctatg |
45533185 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 351; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 21 - 476
Target Start/End: Original strand, 48279436 - 48279885
Alignment:
| Q |
21 |
ttcttagcaagttatcgttattaaacttgatcttgaagaggcaaagaaaatataaagaaataggaaacgagtagggtatcaatgccatgtttttcaactg |
120 |
Q |
| |
|
|||||||||||| |||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
48279436 |
ttcttagcaagtgatcgttattacacttggtcttgaagaggcaaagaaaatataaagaaataggaaacgagtagggtatcaatgccatgtttttcaactg |
48279535 |
T |
|
| Q |
121 |
ccagttttgcgatatggaaatgggaacattttggtggcagtgaagaaatcacaaagcagtcggtgcgtggtggctaagtttttaactaggagatggcggt |
220 |
Q |
| |
|
| |||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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|
| T |
48279536 |
ctagttctgcgatagggaaatgggaacattttggtggcagtgaagaaatcacaaagcagtcggtgcgtgggggctaagtttttaactaggagatggcggt |
48279635 |
T |
|
| Q |
221 |
ggttgtgctatgttgatggcgcggtacggcagatgcggttactaagaaaactttcatcttctttcttctcttcagaaaaggtagatactgctcttctctc |
320 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
48279636 |
ggtcatgctatgttgatggcgcggtacggcagatgcggttactaagaaaactttcatgttctttcttctcttcagaaaaggtagatactgctcttctctc |
48279735 |
T |
|
| Q |
321 |
aataaggatgtaagtctttttgttcgggttacannnnnnnatctattcttatttggctattatgttatgtccatggtagcagacacaccattcttgatga |
420 |
Q |
| |
|
||||| |||||| |||||||||||||||||| | ||||||||||||||||||| ||||||||| |||||||||||||||||||||||||| |
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|
| T |
48279736 |
aataa-gatgtaggtctttttgttcgggttatatttttttatctattcttatttggcta-----ttatgtccagggtagcagacacaccattcttgatga |
48279829 |
T |
|
| Q |
421 |
ggtcaagatattggaatcacatggagcaataaatattttattgggtcatccttcat |
476 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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|
| T |
48279830 |
ggtcaagatattggaatcacatggagcagtaaatattttattgggtcatccttcat |
48279885 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0039 (Bit Score: 317; Significance: 1e-179; HSPs: 1)
Name: scaffold0039
Description:
Target: scaffold0039; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 15 - 476
Target Start/End: Original strand, 83034 - 83489
Alignment:
| Q |
15 |
attctattcttagcaagttatcgttattaaacttgatcttgaagaggcaaagaaaatataaagaaataggaaacgagtagggtatcaatgccatgttttt |
114 |
Q |
| |
|
||||||||| |||||||| |||||||||| ||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||| |
|
|
| T |
83034 |
attctattcatagcaagtgatcgttattacacttggtcttgaagaggcaaagaaaatataaagaaataggaaacaagtagggtatcaatgtcatgttttt |
83133 |
T |
|
| Q |
115 |
caactgccagttttgcgatatggaaatgggaacattttggtggcagtgaagaaatcacaaagcagtcggtgcgtggtggctaagtttttaactaggagat |
214 |
Q |
| |
|
|||||||||||||||||||| ||||||||| | ||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||| |
|
|
| T |
83134 |
caactgccagttttgcgatagggaaatggggaaattttggtggcagtgaagaaatcacaaagcagtcgatgcgtgggggctaagtttttaactaggagat |
83233 |
T |
|
| Q |
215 |
ggcggtggttgtgctatgttgatggcgcggtacggcagatgcggttactaagaaaactttcatcttctttcttctcttcagaaaaggtagatactgctct |
314 |
Q |
| |
|
||||||||| |||||||||||||||| ||||||| |||||||||||||||||||||||| || ||||||||||||||||||||||||||||| || ||| |
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|
| T |
83234 |
ggcggtggtcatgctatgttgatggcgtggtacggaagatgcggttactaagaaaacttttatgttctttcttctcttcagaaaaggtagatattgttct |
83333 |
T |
|
| Q |
315 |
tctctcaataaggatgtaagtctttttgttcgggttacannnnnnnatctattcttatttggctattatgttatgtccatggtagcagacacaccattct |
414 |
Q |
| |
|
||||||||||| ||||||||| ||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
83334 |
tctctcaataa-gatgtaagtatttttgttcgggttacatttttttctctattcttatttggcta-----ttatgtccatggtagcagacacaccattca |
83427 |
T |
|
| Q |
415 |
tgatgaggtcaagatattggaatcacatggagcaataaatattttattgggtcatccttcat |
476 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||| |
|
|
| T |
83428 |
tgatgaggtcaagatattggaatcacatggagcagtaaatattttattcggtcatccttcat |
83489 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 385 - 476
Target Start/End: Complemental strand, 23095937 - 23095845
Alignment:
| Q |
385 |
ttatgtccatggtagcagacacaccattcttgatgaggtca-agatattggaatcacatggagcaataaatattttattgggtcatccttcat |
476 |
Q |
| |
|
||||||| ||||||||||||| ||||||||||||| |||| || |||||| ||||||||| |||| || ||||||||| |||| ||||||| |
|
|
| T |
23095937 |
ttatgtcggtggtagcagacacgccattcttgatgatgtcataggtattgggatcacatgggccaatgaagattttattgtgtcaaccttcat |
23095845 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 389 - 435
Target Start/End: Complemental strand, 24564737 - 24564691
Alignment:
| Q |
389 |
gtccatggtagcagacacaccattcttgatgaggtcaagatattgga |
435 |
Q |
| |
|
|||| ||||||||||| |||||||||||| ||||||||| ||||||| |
|
|
| T |
24564737 |
gtccgtggtagcagactcaccattcttgaagaggtcaaggtattgga |
24564691 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 265 - 322
Target Start/End: Complemental strand, 24564854 - 24564794
Alignment:
| Q |
265 |
agaaaactttcatcttctttcttctc---ttcagaaaaggtagatactgctcttctctcaa |
322 |
Q |
| |
|
||||||||||||| |||||||||||| ||||| ||||||| ||| |||||||||||||| |
|
|
| T |
24564854 |
agaaaactttcatgttctttcttctccatttcaggaaaggtatatagtgctcttctctcaa |
24564794 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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