View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1511_low_29 (Length: 480)
Name: NF1511_low_29
Description: NF1511
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1511_low_29 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 429; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 429; E-Value: 0
Query Start/End: Original strand, 19 - 470
Target Start/End: Original strand, 32729983 - 32730432
Alignment:
| Q |
19 |
atcaggccaacggtaagttaattctatccaaagaggagtatatattaaaattaaaatgataatgtatacaaactcacactttgagtcttggaattaaagt |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32729983 |
atcaggccaacggtaagttaattctatccaaagaggagtatatattaaaattaaaatgata--gtatacaaactcacactttgagtcttggaattaaagt |
32730080 |
T |
|
| Q |
119 |
gtataattaattaatcatttggtataacatatatatatgcaggctcttaaaattcttgaatgtgataatctaaaacttggcccattgaaacacatcaaca |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32730081 |
gtataattaattaatcatttggtataacatatatatatgcaggctcttaaaattcttgaatgtgataatctaaaacttggcccattgaaacacatcaaca |
32730180 |
T |
|
| Q |
219 |
gccccagaaatcatataagtatagttggatgcaatgacgctttaatctctaatcttcatataattgctccaaaggatagtcccaacaccgatgggattga |
318 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32730181 |
gccccagaaatcatataagtatagtcggatgcaatgacgctttaatctctaatcttcatataattgctccaaaggatagtcccaacaccgatgggattga |
32730280 |
T |
|
| Q |
319 |
catttcaacatcaaccaagatctccgttcagcattcaatcatttcaactggtttagttctagattatttctaatcatatatttatgttgatcacaaagtc |
418 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32730281 |
catttcaacatcaaccaacatctccgttcagcattcaatcatttcaactggtttagttctagattatttctaatcatatatttatgttgatcacaaagtc |
32730380 |
T |
|
| Q |
419 |
aaaaattaattaatgtgatttatatttttaaaatttctgatttattgttcat |
470 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
32730381 |
aaaaattaattaatgtgatttatatttttaaaatttcttatttattgttcat |
32730432 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 92; Significance: 2e-44; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 141 - 336
Target Start/End: Original strand, 38089987 - 38090182
Alignment:
| Q |
141 |
tataacatatatatatgcaggctcttaaaattcttgaatgtgataatctaaaacttggcccattgaaacacatcaacagccccagaaatcatataagtat |
240 |
Q |
| |
|
|||||||| | ||| ||||||||||| || |||||| ||||||||||||||||||||| ||||||| |||||| ||||||| | |||||||||||| || |
|
|
| T |
38089987 |
tataacatgtttatctgcaggctcttcaatttcttggatgtgataatctaaaacttggtccattgagacacattgacagcccaaaaaatcatataagcat |
38090086 |
T |
|
| Q |
241 |
agttggatgcaatgacgctttaatctctaatcttcatataattgctccaaaggatagtcccaacaccgatgggattgacatttcaacatcaaccaa |
336 |
Q |
| |
|
||| | ||||||| |||||||||||| |||||||||||||||| || || ||||||||||||||||||| ||||| ||||||| ||||||||| |
|
|
| T |
38090087 |
agtcgattgcaatggcgctttaatctcccatcttcatataattgcaccggagaatagtcccaacaccgatggaattgatatttcaagatcaaccaa |
38090182 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 203 - 318
Target Start/End: Complemental strand, 19057407 - 19057292
Alignment:
| Q |
203 |
ttgaaacacatcaacagccccagaaatcatataagtatagttggatgcaatgacgctttaatctctaatcttcatataattgctccaaaggatagtccca |
302 |
Q |
| |
|
||||| ||||| |||||||| ||||||||||||||||||| | |||||| |||||| ||||| |||||||| |||||||| || | ||||||| | |
|
|
| T |
19057407 |
ttgaatcacattaacagcccaagaaatcatataagtatagattcatgcaaaaacgcttccatctccaatcttcagataattgcgcccgaaaatagtccaa |
19057308 |
T |
|
| Q |
303 |
acaccgatgggattga |
318 |
Q |
| |
|
|||| ||||||||||| |
|
|
| T |
19057307 |
acactgatgggattga |
19057292 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University