View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1511_low_3 (Length: 846)

Name: NF1511_low_3
Description: NF1511
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1511_low_3
NF1511_low_3
[»] chr3 (23 HSPs)
chr3 (370-607)||(8349969-8350207)
chr3 (377-556)||(8252867-8253046)
chr3 (18-164)||(8340524-8340670)
chr3 (18-152)||(8350424-8350558)
chr3 (18-151)||(8353531-8353665)
chr3 (321-545)||(8352758-8353004)
chr3 (370-571)||(8260574-8260793)
chr3 (380-531)||(8356339-8356508)
chr3 (380-469)||(8360592-8360681)
chr3 (382-462)||(8334134-8334214)
chr3 (671-716)||(8349624-8349669)
chr3 (469-560)||(8265551-8265642)
chr3 (485-559)||(8334018-8334093)
chr3 (374-464)||(8258592-8258682)
chr3 (157-213)||(8339984-8340040)
chr3 (250-298)||(8353006-8353054)
chr3 (469-560)||(8258478-8258569)
chr3 (374-464)||(8265665-8265755)
chr3 (321-358)||(8350237-8350274)
chr3 (148-200)||(8356620-8356672)
chr3 (148-200)||(8360837-8360889)
chr3 (469-528)||(8360515-8360574)
chr3 (18-68)||(8256216-8256266)
[»] chr1 (1 HSPs)
chr1 (681-805)||(44799682-44799806)


Alignment Details
Target: chr3 (Bit Score: 187; Significance: 1e-101; HSPs: 23)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 370 - 607
Target Start/End: Complemental strand, 8350207 - 8349969
Alignment:
Q  370 tcactttttgatggctttgatttcatctttcttcaattgttttggtccttcttcaaactcatcatctcaagtttctgataatgctgaaaattcatgtcaa 469  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  8350207 tcactttttgatggctttgatttcatcattcttcaattgttttggtccttcttcaaactcatcttctcaagtttctgataatgctgaaaattcatgtcaa 8350108  T
Q  470 gagaaatcaaagaggaaggaaaaatcaaagggagctccgattgtagtttcttatttccctgttaactattatccctcgcgcttgtagtcatgtagtatta 569  Q
    |||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||| |||||||||||||| | | |||    
T  8350107 gagaaatcaaagaggaaggaaaaatcaaagggagctccaattatagtttcttatttccctgttaactattatccctcacgcttgtagtcatgcaatgtta 8350008  T
Q  570 atttacatctgctactt-atcaagaagagtgtaatcaac 607  Q
    ||||||||||||||||| || |  |||||||||||||||    
T  8350007 atttacatctgctacttaattatcaagagtgtaatcaac 8349969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 140; E-Value: 7e-73
Query Start/End: Original strand, 377 - 556
Target Start/End: Complemental strand, 8253046 - 8252867
Alignment:
Q  377 ttgatggctttgatttcatctttcttcaattgttttggtccttcttcaaactcatcatctcaagtttctgataatgctgaaaattcatgtcaagagaaat 476  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||     
T  8253046 ttgatggctttgatttcatcattcttcaattgttttggtccttcttcaaactcatcttctcaagtttctgataatgctgaaaattcatgtcaagagaaac 8252947  T
Q  477 caaagaggaaggaaaaatcaaagggagctccgattgtagtttcttatttccctgttaactattatccctcgcgcttgtag 556  Q
    ||||||||||||||||||||||||||||||| |||| ||||||||||||| |||||||| ||| || ||| |||||||||    
T  8252946 caaagaggaaggaaaaatcaaagggagctccaattgcagtttcttatttctctgttaacaattgtctctcacgcttgtag 8252867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 139; E-Value: 3e-72
Query Start/End: Original strand, 18 - 164
Target Start/End: Complemental strand, 8340670 - 8340524
Alignment:
Q  18 aataagctctgaaaaagacagaagaaataacattgtaatttcgaatgcataattaacaagtgtccaaagcagccacaaaatatatgcatacattgaagaa 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||    
T  8340670 aataagctctgaaaaagacagaagaaataacattgtaatttcgaatgcataatcaacaagtttccaaagcagccacaaaatatatgcatacattgaagaa 8340571  T
Q  118 ttttcaaagttcaatgtggtcccaaaaatgttctccttgctcgctaa 164  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  8340570 ttttcaaagttcaatgtggtcccaaaaatgttctccttgctcgctaa 8340524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 18 - 152
Target Start/End: Complemental strand, 8350558 - 8350424
Alignment:
Q  18 aataagctctgaaaaagacagaagaaataacattgtaatttcgaatgcataattaacaagtgtccaaagcagccacaaaatatatgcatacattgaagaa 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||    
T  8350558 aataagctctgaaaaagacagaagaaataacattgtaatttcgaatgcatattcaacaagtgtccaaagcagccacaaaatatatgcatacattgaagaa 8350459  T
Q  118 ttttcaaagttcaatgtggtcccaaaaatgttctc 152  Q
    |||||||||||| |||||||||||||||| |||||    
T  8350458 ttttcaaagttctatgtggtcccaaaaattttctc 8350424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 95; E-Value: 5e-46
Query Start/End: Original strand, 18 - 151
Target Start/End: Complemental strand, 8353665 - 8353531
Alignment:
Q  18 aataagctctgaaaaagacagaagaaataacattgtaatttcgaatgcataattaacaagtgtccaaagcagccac-aaaatatatgcatacattgaaga 116  Q
    ||||||||||||||||||||||||||||||| |||||||||||||| | |||| | |||||||||||||||||||| ||||||||||||||| | |||||    
T  8353665 aataagctctgaaaaagacagaagaaataacgttgtaatttcgaatacttaatcagcaagtgtccaaagcagccacaaaaatatatgcatacgtagaaga 8353566  T
Q  117 attttcaaagttcaatgtggtcccaaaaatgttct 151  Q
    ||||||||||||| |||||||||||||||||||||    
T  8353565 attttcaaagttctatgtggtcccaaaaatgttct 8353531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 321 - 545
Target Start/End: Complemental strand, 8353004 - 8352758
Alignment:
Q  321 actgcaatttcaagtcacacctaaatcttcatttcatt----tgtaaaccaagtcactttttgatggctttgatttcatctttcttcaattgttttggtc 416  Q
    ||||| ||||||||||||||||||||| ||||||||||    || ||||||| ||||||||||||||||||||||||||| || |||||||| |||||||    
T  8353004 actgcgatttcaagtcacacctaaatcctcatttcattgcagtgcaaaccaaatcactttttgatggctttgatttcatcatttttcaattgctttggtc 8352905  T
Q  417 cttcttcaaactcatcatctcaagtttctgataatgctgaaaattcatgtca------------------agagaaatcaaagaggaaggaaaaatcaaa 498  Q
    ||||||| |||||||| |||||||||| |||| ||| |||||| |||| |||                  ||| |||| |||||| ||||||||||| ||    
T  8352904 cttcttcgaactcatcttctcaagtttatgattatgatgaaaaatcatctcaatcgaaatcttcatcttcagaaaaattaaagagaaaggaaaaatctaa 8352805  T
Q  499 gggagctccgattgtagtttcttatttccctgttaactattatccct 545  Q
     |||||| | |||||||||||||||||||||||||||||||||||||    
T  8352804 tggagcttcaattgtagtttcttatttccctgttaactattatccct 8352758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 370 - 571
Target Start/End: Complemental strand, 8260793 - 8260574
Alignment:
Q  370 tcactttttgatggctttgatttcatctttcttcaattgttttggtccttcttcaaactcatcatctcaagtttctgataatgctgaaaattcatgtcaa 469  Q
    ||||||||||||||||||||||||||| ||||| | ||| ||||| | ||||| | ||||||||||||||||||||||| ||| |||||| |||| | ||    
T  8260793 tcactttttgatggctttgatttcatccttcttaagttgctttggccattctttagactcatcatctcaagtttctgattatgatgaaaaatcatctaaa 8260694  T
Q  470 gagaaatc------------------aaagaggaaggaaaaatcaaagggagctccgattgtagtttcttatttccctgttaactattatccctcgcgct 551  Q
      ||||||                  |||||| || |||||||||||| ||||||| |||||||||||||||||||||||||||| ||||| ||| || |    
T  8260693 ttgaaatcttcatctttagagaaacaaaagagcaaagaaaaatcaaagagagctccaattgtagtttcttatttccctgttaactcttatctctcacgtt 8260594  T
Q  552 tgtagtcatgtagtattaat 571  Q
    |||||||||| |||||||||    
T  8260593 tgtagtcatgcagtattaat 8260574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 380 - 531
Target Start/End: Complemental strand, 8356508 - 8356339
Alignment:
Q  380 atggctttgatttcatctttcttcaattgttttggtccttcttcaaactcatcatctcaagtttctgataatgctgaaaattcatgtca----------- 468  Q
    ||||||||||||| | | ||||||||||| |||||||  |||||||||||||||||||||||||||||| ||||| ||||||||| |||               
T  8356508 atggctttgattttaccgttcttcaattgctttggtctctcttcaaactcatcatctcaagtttctgattatgctcaaaattcatctcaaatgaaatctt 8356409  T
Q  469 -------agagaaatcaaagaggaaggaaaaatcaaagggagctccgattgtagtttcttatttccctgt 531  Q
           ||||||| ||||||| ||||||||||||| ||||||||| ||||||||| |||||||||||||    
T  8356408 caacttcagagaaaccaaagagcaaggaaaaatcaatgggagctccaattgtagttccttatttccctgt 8356339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 380 - 469
Target Start/End: Complemental strand, 8360681 - 8360592
Alignment:
Q  380 atggctttgatttcatctttcttcaattgttttggtccttcttcaaactcatcatctcaagtttctgataatgctgaaaattcatgtcaa 469  Q
    ||||||||||||||| ||||||||||||| || ||||  |||||||||| ||||||||||||||||||| ||| ||||||||||| ||||    
T  8360681 atggctttgatttcagctttcttcaattgcttcggtctctcttcaaacttatcatctcaagtttctgattatgttgaaaattcatctcaa 8360592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 382 - 462
Target Start/End: Complemental strand, 8334214 - 8334134
Alignment:
Q  382 ggctttgatttcatctttcttcaattgttttggtccttcttcaaactcatcatctcaagtttctgataatgctgaaaattc 462  Q
    ||||||||| ||| | | ||||||||||||||||||||||||||||||||| || ||||||| ||| ||||||||||||||    
T  8334214 ggctttgatatcaccatacttcaattgttttggtccttcttcaaactcatcttcacaagtttatgagaatgctgaaaattc 8334134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 671 - 716
Target Start/End: Complemental strand, 8349669 - 8349624
Alignment:
Q  671 ttcaatgattggttgcttgcggcacaagaatctggttcagcttaaa 716  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  8349669 ttcaatgattggttgcttgcggcacaagaatctggttcagcttaaa 8349624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 469 - 560
Target Start/End: Complemental strand, 8265642 - 8265551
Alignment:
Q  469 agagaaatcaaagaggaaggaaaaatcaaagggagctccgattgtagtttcttatttccctgttaactattatccctcgcgcttgtagtcat 560  Q
    |||||||  |||||| ||||||||||||||||||||||| |||||||| | | ||||||||| ||||| ||||| ||| || ||||||||||    
T  8265642 agagaaacaaaagagtaaggaaaaatcaaagggagctccaattgtagtatatcatttccctgctaactcttatctctctcgtttgtagtcat 8265551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 485 - 559
Target Start/End: Complemental strand, 8334093 - 8334018
Alignment:
Q  485 aaggaaaaatcaaagggagctccgattgtagtttcttatttccctgttaactattat-ccctcgcgcttgtagtca 559  Q
    |||||||||||||| |||| ||| |||||||||||||||||||  |||||||||||| ||||| ||||||||||||    
T  8334093 aaggaaaaatcaaaaggagttccaattgtagtttcttatttcctcgttaactattatcccctcacgcttgtagtca 8334018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 374 - 464
Target Start/End: Complemental strand, 8258682 - 8258592
Alignment:
Q  374 tttttgatggctttgatttcatctttcttcaattgttttggtccttcttcaaactcatcatctcaagtttctgataatgctgaaaattcat 464  Q
    ||||| |||||||||||||||||  | || | ||| ||||| | ||||||||||||||||||||||||||||||| ||| |||||| ||||    
T  8258682 ttttttatggctttgatttcatccattttaagttgctttggccattcttcaaactcatcatctcaagtttctgattatgatgaaaaatcat 8258592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 157 - 213
Target Start/End: Complemental strand, 8340040 - 8339984
Alignment:
Q  157 ctcgctaagcaaatggactaacatagtaccttcctaacctttttgtaatcattctat 213  Q
    |||||||||||||||||||||||||||||||||||||  ||||||| || |||||||    
T  8340040 ctcgctaagcaaatggactaacatagtaccttcctaaattttttgttatgattctat 8339984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 250 - 298
Target Start/End: Complemental strand, 8353054 - 8353006
Alignment:
Q  250 ataaccagaatttaaaccaatattacaactaaatcatttaagctttgca 298  Q
    |||||| ||||| ||||||||||||||||||||||||||||||||||||    
T  8353054 ataacctgaattcaaaccaatattacaactaaatcatttaagctttgca 8353006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 469 - 560
Target Start/End: Complemental strand, 8258569 - 8258478
Alignment:
Q  469 agagaaatcaaagaggaaggaaaaatcaaagggagctccgattgtagtttcttatttccctgttaactattatccctcgcgcttgtagtcat 560  Q
    |||||||  |||||| ||||||||||||||||||||||| |||||||| | | ||||||||  ||||| ||||| ||| || ||||||||||    
T  8258569 agagaaacaaaagagtaaggaaaaatcaaagggagctccaattgtagtatatcatttccctactaactcttatctctcacgtttgtagtcat 8258478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 374 - 464
Target Start/End: Complemental strand, 8265755 - 8265665
Alignment:
Q  374 tttttgatggctttgatttcatctttcttcaattgttttggtccttcttcaaactcatcatctcaagtttctgataatgctgaaaattcat 464  Q
    ||||| ||||||||||||||||| ||||| | ||| ||||| | ||||| | ||||||| ||||||||||||||| ||| |||||| ||||    
T  8265755 ttttttatggctttgatttcatccttcttaagttgctttggccattctttagactcatcgtctcaagtttctgattatgatgaaaaatcat 8265665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 321 - 358
Target Start/End: Complemental strand, 8350274 - 8350237
Alignment:
Q  321 actgcaatttcaagtcacacctaaatcttcatttcatt 358  Q
    |||||||||| |||||||||||||||||||||||||||    
T  8350274 actgcaattttaagtcacacctaaatcttcatttcatt 8350237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 148 - 200
Target Start/End: Complemental strand, 8356672 - 8356620
Alignment:
Q  148 ttctccttgctcgctaagcaaatggactaacatagtaccttcctaaccttttt 200  Q
    ||||||||||| ||||||||||||| | ||| ||| |||||||||||||||||    
T  8356672 ttctccttgcttgctaagcaaatggtccaacgtagaaccttcctaaccttttt 8356620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 148 - 200
Target Start/End: Complemental strand, 8360889 - 8360837
Alignment:
Q  148 ttctccttgctcgctaagcaaatggactaacatagtaccttcctaaccttttt 200  Q
    ||||| ||||| |||||||||||||| |||| ||| |||||||||||||||||    
T  8360889 ttctctttgcttgctaagcaaatggagtaacgtagaaccttcctaaccttttt 8360837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 469 - 528
Target Start/End: Complemental strand, 8360574 - 8360515
Alignment:
Q  469 agagaaatcaaagaggaaggaaaaatcaaagggagctccgattgtagtttcttatttccc 528  Q
    ||||||| ||||||  |||||||||||||  |||||||| ||||||||| ||||||||||    
T  8360574 agagaaaccaaagatcaaggaaaaatcaataggagctccaattgtagttacttatttccc 8360515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 68
Target Start/End: Complemental strand, 8256266 - 8256216
Alignment:
Q  18 aataagctctgaaaaagacagaagaaataacattgtaatttcgaatgcata 68  Q
    |||||||||||||||||||| | |||| ||||||||||| |||||| ||||    
T  8256266 aataagctctgaaaaagacaaacgaaacaacattgtaatatcgaatacata 8256216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 89; Significance: 2e-42; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 681 - 805
Target Start/End: Original strand, 44799682 - 44799806
Alignment:
Q  681 ggttgcttgcggcacaagaatctggttcagcttaaaggacagtgttgtgaagggaatgaactggttttggtttatgagtatttaccatatggaagccttc 780  Q
    ||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||| |||||||||||||||||||| ||||| |||||||||||     
T  44799682 ggttgcttgcggcacaagaatctggttcagcttaaagggtggtgttgtgaagggaatgaattggttttggtttatgagtatctaccaaatggaagccttg 44799781  T
Q  781 ataaagttcttcatagaaatttaag 805  Q
    |||||||||| ||||| ||||||||    
T  44799782 ataaagttctgcataggaatttaag 44799806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University