View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1511_low_32 (Length: 469)
Name: NF1511_low_32
Description: NF1511
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1511_low_32 |
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| [»] chr7 (4 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 453; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 453; E-Value: 0
Query Start/End: Original strand, 1 - 469
Target Start/End: Complemental strand, 33742881 - 33742414
Alignment:
| Q |
1 |
cacatctgatcttgtctctgcttcatttcctacaataataaaccaaaaatgattattaaagaatgttgtcccatttgaaactagtataaatgaaaaatga |
100 |
Q |
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| T |
33742881 |
cacatctgatcttgtctttgcttcatttcctacaataataaaccaaaaatgattattaaagaatgttgtcccatttgaaactagtataaatgaaaaatga |
33742782 |
T |
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| Q |
101 |
ttattaatttgagcagaatatgaattcagttcatttgccaaacatgttactgccttgcagggaaagacacaagaacatgaataagttcaatacatttgtc |
200 |
Q |
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| T |
33742781 |
ttattaatttgagcagaatatgaattcagttcatttgccaaacatgttactgccttgcagggaaagacacaagaacatgaataagttcaatacatttgtc |
33742682 |
T |
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| Q |
201 |
aaatcatgatagaaagtgggaataaaattgtttgtacctcataatactcttggtactgattttcccatgttttctgtctgtaatgcctctcttcctcatt |
300 |
Q |
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| T |
33742681 |
aa-tcatgatagaaagtgggaataaaattgtttgtacctcataatactcttggtactgattttcccatgttttctgtctgtaatgcctctcttcctcatt |
33742583 |
T |
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| Q |
301 |
taaaaggtagccatcaacctatgcagcattttcgcagcgagaataatcaatgtcttatgcatgaccatgaaatgatagtaaaatagcgcggacacaaata |
400 |
Q |
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| T |
33742582 |
taaaaggtagccatcaacctatgcagcattttcacagcgagaataatcaatgtcttatgcatgaccatgaaatgatagtaaaatagcgcggacacaaata |
33742483 |
T |
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| Q |
401 |
tgtgcttgtgtgtgtaatacaaagcagcatctagatggaaaaatttcaagagcctaacaaaaatatcat |
469 |
Q |
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| T |
33742482 |
tgtgcttgtgtgtgtaatacaaagcagcatctagatggaaaaatttcaagagcctaacaaaaatatcat |
33742414 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 221 - 437
Target Start/End: Complemental strand, 33731221 - 33730996
Alignment:
| Q |
221 |
aataaaattgtttgtacctcataatactcttggtactgattttcccatgttttctgtctgtaatgcctctcttcctcatttaaaaggtagccatcaacct |
320 |
Q |
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| T |
33731221 |
aataaaattgtctgtacctcaagatactcgcggttctgattttcccatattatcttcctgtacgacttctcttcctcattgaaaaggaacgcatcaacct |
33731122 |
T |
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| Q |
321 |
atgcagcattttcgcagcgagaataatcaatgt-cttatgcatgaccatgaaatgatagtaaaatag--------cgcggacacaaatatgtgcttgtgt |
411 |
Q |
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| T |
33731121 |
aagcagcattttggcagcaagaataatcagtgtgtttatgcatgacaatgatctgatagtataatagcgcagagccgcagacacaaacatgtgtttgtgt |
33731022 |
T |
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| Q |
412 |
gtgtaatacaaagcagcatctagatg |
437 |
Q |
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| T |
33731021 |
gtgtaatacaaagcaacatcaagatg |
33730996 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 67 - 152
Target Start/End: Complemental strand, 33732994 - 33732909
Alignment:
| Q |
67 |
tgtcccatttgaaactagtataaatgaaaaatgattattaatttgagcagaatatgaattcagttcatttgccaaacatgttactg |
152 |
Q |
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| T |
33732994 |
tgtcacatttgaaactaatatagatgaaaaatgagtattaatttgatcagaattcaaattcagttcatttgccaaacatgtcactg |
33732909 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 62 - 125
Target Start/End: Complemental strand, 33737684 - 33737621
Alignment:
| Q |
62 |
aatgttgtcccatttgaaactagtataaatgaaaaatgattattaatttgagcagaatatgaat |
125 |
Q |
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| T |
33737684 |
aatgctgtcccatttgaaacaaatataaatgaaaaatgagtattaatttgatttgaatatgaat |
33737621 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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