View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1511_low_35 (Length: 455)
Name: NF1511_low_35
Description: NF1511
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1511_low_35 |
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Alignment Details
Target: chr6 (Bit Score: 155; Significance: 4e-82; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 18 - 192
Target Start/End: Original strand, 4411009 - 4411183
Alignment:
| Q |
18 |
aaactaaacttgagatacatgttatcgcctaccctatttaaatccattctttaaggctacaaacgactaactgtttgtcttatagtttgttgctattaaa |
117 |
Q |
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| T |
4411009 |
aaactaaacttgagatacacgttatcgcctaccctatttaaatccattctttaaggctacaaacgactaactgtttgtcttatagtttgttgctgttaaa |
4411108 |
T |
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| Q |
118 |
gacaacagagcacataggcaccgttgaatttatgacgcgagaataatgaatctgagaccctgtgatgagtacaaa |
192 |
Q |
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| T |
4411109 |
gacaacagagcacataggcactgttgaatttatgacgtgagaataatgaatctgagaccttgtgatgagtacaaa |
4411183 |
T |
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Target: chr6; HSP #2
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 320 - 433
Target Start/End: Original strand, 4411524 - 4411637
Alignment:
| Q |
320 |
gcttaatgtgataaaatgtaaaatttcaagatttgaacacaattaatggacaattttttccaattttgagtatatgttagaatttcaatctctttgtata |
419 |
Q |
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| T |
4411524 |
gcttaatgtgataaaatgtataatttcaagatttgaacacaattaatggacaattttttccaattttgagtatatgttagaatttcaatctctttgtata |
4411623 |
T |
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| Q |
420 |
aataagtacacaca |
433 |
Q |
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| T |
4411624 |
aataagtacacaca |
4411637 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 186 - 283
Target Start/End: Original strand, 4411388 - 4411485
Alignment:
| Q |
186 |
gtacaaatcaatcaattattaattataaatcaataaatatattttttatagattaagtttattctttaactagtaaaaaatagtcaatatctttaaac |
283 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4411388 |
gtaccaatcaatcaattattaattataaatcaataaatatattttttatagagtaagtttattctttaactagtaaaaaatagtcaatatctttaaac |
4411485 |
T |
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