View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1511_low_37 (Length: 453)
Name: NF1511_low_37
Description: NF1511
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1511_low_37 |
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Alignment Details
Target: chr3 (Bit Score: 391; Significance: 0; HSPs: 9)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 13 - 438
Target Start/End: Original strand, 53430788 - 53431226
Alignment:
| Q |
13 |
tagggcaattgaaattatcagggacagtttttgaaataaccttaatagttgttgtgttatatcctatgtaacacaagaagttcaagtagtcaatggtgct |
112 |
Q |
| |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53430788 |
tagggcagttgaaattatcagggacagtttttgaaataaccttaatagttgttgtgttatatcctatgtaacacaagaagttcaagtagtcaatggtgct |
53430887 |
T |
|
| Q |
113 |
ggtttcataaacaagacctggtcggtatgattcagttggtgttatttcacctgctccatagtcataaggtgtggcaatcgaccctaaatctgttgtaatg |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53430888 |
ggtttcataaacaagacctggtcggtatgattcagttggtgttatttcacctgctccatagtcataaggtgtggcaatcgaccctaaatctgttgtaatg |
53430987 |
T |
|
| Q |
213 |
ggatccttcaagttgttaacttgagttgctgaatttagaaaaaataggaatttatgagttgatagataggattacatttacatacatac----------- |
301 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53430988 |
ggatccttcaagttgttaacttgagttgctgaatttagaaaaaataggaatttatgagttgatagataggattacatttacatacatacattttataggg |
53431087 |
T |
|
| Q |
302 |
--attgagttgacagatatacctgaggtcatgatggctgatctaattgcggaggcactccaagtagggtttctagatttgatgcttcctgcaaggcctga |
399 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53431088 |
aaattgagttgacagatatacctgaggtcatgatggctgatctaattgcggaggcactccaagtagggtttctagatttgatgcttcctgcaaggcctga |
53431187 |
T |
|
| Q |
400 |
aacatgtggacatgccatggaagtccctgattcaatgtt |
438 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||| |
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| T |
53431188 |
aacatgtggacatgccatggaagtccctgattcaatgtt |
53431226 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 13 - 253
Target Start/End: Original strand, 26095175 - 26095415
Alignment:
| Q |
13 |
tagggcaattgaaattatcagggacagtttttgaaataaccttaatagttgttgtgttatatcctatgtaacacaagaagttcaagtagtcaatggtgct |
112 |
Q |
| |
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||||||| |||||| ||||||||||||||||||||||||||||||| || ||||||||||||||||| |||||||||||||||||||||||||||||||| |
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|
| T |
26095175 |
tagggcagttgaaactatcagggacagtttttgaaataaccttaatggtggttgtgttatatcctatataacacaagaagttcaagtagtcaatggtgct |
26095274 |
T |
|
| Q |
113 |
ggtttcataaacaagacctggtcggtatgattcagttggtgttatttcacctgctccatagtcataaggtgtggcaatcgaccctaaatctgttgtaatg |
212 |
Q |
| |
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|||||||||||| || |||||| || || |||||||| |||||| | || |||||||||||||||||||||||||| ||||||||||||||| |||| |
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| T |
26095275 |
ggtttcataaacgagccctggttggagtggttcagttgttgttatccccccagctccatagtcataaggtgtggcaattaaccctaaatctgttgcaatg |
26095374 |
T |
|
| Q |
213 |
ggatccttcaagttgttaacttgagttgctgaatttagaaa |
253 |
Q |
| |
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||| |||||| ||||||| ||||||||||| ||||||||| |
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|
| T |
26095375 |
ggacccttcatattgttaatttgagttgctgcatttagaaa |
26095415 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 138; E-Value: 6e-72
Query Start/End: Original strand, 15 - 256
Target Start/End: Complemental strand, 48375026 - 48374785
Alignment:
| Q |
15 |
gggcaattgaaattatcagggacagtttttgaaataaccttaatagttgttgtgttatatcctatgtaacacaagaagttcaagtagtcaatggtgctgg |
114 |
Q |
| |
|
||||| |||||| |||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||| | |||||||||||||||||||| | |
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|
| T |
48375026 |
gggcagttgaaagtatcagggacagtttttgaaataaccttaatagtggttgtgttgtatcctatgtaacacaagtaattcaagtagtcaatggtgctag |
48374927 |
T |
|
| Q |
115 |
tttcataaacaagacctggtcggtatgattcagttggtgttatttcacctgctccatagtcataaggtgtggcaatcgaccctaaatctgttgtaatggg |
214 |
Q |
| |
|
|||||||||| ||||||||| || |||||||| ||| |||||| || |||||||||||||||||||||||||||| |||||||||||||| |||||||| |
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|
| T |
48374926 |
tttcataaacgagacctggttggaatgattcaattgttgttatgtcccctgctccatagtcataaggtgtggcaactgaccctaaatctgtagtaatggg |
48374827 |
T |
|
| Q |
215 |
atccttcaagttgttaacttgagttgctgaatttagaaaaaa |
256 |
Q |
| |
|
| |||||| || |||| ||| ||||||| || | ||||||| |
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|
| T |
48374826 |
agccttcatattattaatttgtgttgctgcatatcgaaaaaa |
48374785 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 13 - 255
Target Start/End: Original strand, 53422825 - 53423068
Alignment:
| Q |
13 |
tagggcaattgaaattatcagggacagtttttgaaataaccttaatagttg-ttgtgttatatcctatgtaacacaagaagttcaagtagtcaatggtgc |
111 |
Q |
| |
|
|||||||| ||||| || ||||||| |||||||| ||| ||||||| || | |||| || ||||||| |||||||||| ||||||||||||||||||||| |
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| T |
53422825 |
tagggcaactgaaactaccagggacggtttttgagatagccttaattgtgggttgtattgtatcctaggtaacacaagtagttcaagtagtcaatggtgc |
53422924 |
T |
|
| Q |
112 |
tggtttcataaacaagacctggtcggtatgattcagttggtgttatttcacctgctccatagtcataaggtgtggcaatcgaccctaaatctgttgtaat |
211 |
Q |
| |
|
||||||||||||| || |||||| || ||||||||| | ||| ||||| ||||||||||||||||||||||||||||| ||||||||||| |||||||| |
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|
| T |
53422925 |
tggtttcataaactagccctggttggaatgattcagatattgtaatttcccctgctccatagtcataaggtgtggcaattgaccctaaatccgttgtaat |
53423024 |
T |
|
| Q |
212 |
gggatccttcaagttgttaacttgagttgctgaatttagaaaaa |
255 |
Q |
| |
|
||||||||||| ||||||| ||||||||||| |||| |||||| |
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|
| T |
53423025 |
gggatccttcatattgttaatttgagttgctgcattttgaaaaa |
53423068 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 15 - 255
Target Start/End: Original strand, 53307630 - 53307870
Alignment:
| Q |
15 |
gggcaattgaaattatcagggacagtttttgaaataaccttaatagttgttgtgttatatcctatgtaacacaagaagttcaagtagtcaatggtgctgg |
114 |
Q |
| |
|
||||| |||||| |||||||| | ||||| || |||| ||| | || ||||| || ||||||||||||||||| |||| | ||||||||||||||| | |
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|
| T |
53307630 |
gggcagttgaaactatcaggggcggttttagagataatcttcaccgtggttgtattcaatcctatgtaacacaagtagtttaggtagtcaatggtgctag |
53307729 |
T |
|
| Q |
115 |
tttcataaacaagacctggtcggtatgattcagttggtgttatttcacctgctccatagtcataaggtgtggcaatcgaccctaaatctgttgtaatggg |
214 |
Q |
| |
|
|||||||||| || || ||| || ||| |||||||| ||||||||| ||||||||||||||||||||||||||||| ||||| |||| || |||||||| |
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| T |
53307730 |
tttcataaactagcccgggttggaatggttcagttgttgttatttctcctgctccatagtcataaggtgtggcaattgaccccaaattcgtggtaatggg |
53307829 |
T |
|
| Q |
215 |
atccttcaagttgttaacttgagttgctgaatttagaaaaa |
255 |
Q |
| |
|
| |||||| ||||||| ||||| ||||| ||||| ||||| |
|
|
| T |
53307830 |
agccttcatattgttaatttgagctgctgcatttataaaaa |
53307870 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 318 - 423
Target Start/End: Original strand, 26095622 - 26095727
Alignment:
| Q |
318 |
tacctgaggtcatgatggctgatctaattgcggaggcactccaagtagggtttctagatttgatgcttcctgcaaggcctgaaacatgtggacatgccat |
417 |
Q |
| |
|
|||| |||||||||||||||||||| ||||| |||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||| |||| ||| |
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|
| T |
26095622 |
taccggaggtcatgatggctgatctgattgcagaggcactccaagtagggttcctagatttgatgctacctgcaaggcctgaaacatgtgggcatgacat |
26095721 |
T |
|
| Q |
418 |
ggaagt |
423 |
Q |
| |
|
|||||| |
|
|
| T |
26095722 |
ggaagt |
26095727 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 323 - 431
Target Start/End: Original strand, 53423456 - 53423564
Alignment:
| Q |
323 |
gaggtcatgatggctgatctaattgcggaggcactccaagtagggtttctagatttgatgcttcctgcaaggcctgaaacatgtggacatgccatggaag |
422 |
Q |
| |
|
|||||||||||||| ||||| ||||| ||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| |||| ||| |||| |
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|
| T |
53423456 |
gaggtcatgatggccgatctgattgcagaggcactccaagtagggtttctagatttaatgctgcctgcaaggcctgaaacatgtgggcatgacatagaag |
53423555 |
T |
|
| Q |
423 |
tccctgatt |
431 |
Q |
| |
|
||||||||| |
|
|
| T |
53423556 |
tccctgatt |
53423564 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 326 - 423
Target Start/End: Complemental strand, 48374647 - 48374550
Alignment:
| Q |
326 |
gtcatgatggctgatctaattgcggaggcactccaagtagggtttctagatttgatgcttcctgcaaggcctgaaacatgtggacatgccatggaagt |
423 |
Q |
| |
|
||||||||||||||||| ||||| |||||||||||||||||||| |||||||||||||| ||||||||||| ||||||||||| |||| ||||||||| |
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|
| T |
48374647 |
gtcatgatggctgatctgattgcagaggcactccaagtagggttcctagatttgatgctacctgcaaggcccgaaacatgtgggcatgacatggaagt |
48374550 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 338 - 431
Target Start/End: Original strand, 53308221 - 53308314
Alignment:
| Q |
338 |
gatctaattgcggaggcactccaagtagggtttctagatttgatgcttcctgcaaggcctgaaacatgtggacatgccatggaagtccctgatt |
431 |
Q |
| |
|
||||| ||||| |||||||||||| |||||||| || |||| || || ||||||| |||||||||||| || |||| ||| |||||||| |||| |
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| T |
53308221 |
gatctgattgcagaggcactccaaatagggtttttaaatttaattctgcctgcaacgcctgaaacatgagggcatgacatagaagtccccgatt |
53308314 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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