View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1511_low_39 (Length: 452)
Name: NF1511_low_39
Description: NF1511
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1511_low_39 |
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Alignment Details
Target: chr1 (Bit Score: 409; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 409; E-Value: 0
Query Start/End: Original strand, 1 - 446
Target Start/End: Complemental strand, 29063250 - 29062805
Alignment:
| Q |
1 |
atcccttacaacaaaaccattcatatcaaacgagtactcatctggactcacatcactgctaactctgcatgattctgaacctgaaatattgcaggtttca |
100 |
Q |
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|||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29063250 |
atcccttacaacaaaaccattcatttcaaatgagtactcatctggactcacatcactgctaactctgcatgattctgaacctgaaatattgcaggtttca |
29063151 |
T |
|
| Q |
101 |
agaggggtgtaactagcaaaagtgggaggtgtgaaaggaaaagtgttatcttctaaatttgtgttttctataagcttttgaaccatttgaagacgacgag |
200 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
29063150 |
agagtggtgtaactagcaaaagtgggaggtgtgaaaggaaaagtgttatcttctaaatttgtgttttctagaagcttttgaaccatttgaagacgacgag |
29063051 |
T |
|
| Q |
201 |
ggaggtgaagagggaggagttttcctttgtagaagagatcatcagcaggggtagttttggaannnnnnncatttgagatagaactactcatttggaattc |
300 |
Q |
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| T |
29063050 |
ggaggtgaagagggaggagttttcctttgtagaagagatcatcagcaggggtagttttggaatttttttcatttgagatagaactactcatttggaattc |
29062951 |
T |
|
| Q |
301 |
aaactctctggtattctttggtggagaaccaaaagaataagagaagaagtgtgagggagaacatagttccatgtcaatgtagtcttcatctacatgaacc |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29062950 |
aaactctctggtattctttggtggagaaccaaaagaataagagaagaagtgtgagggagaacatagttccatgtcaatgtagtcttcatctacatgaacc |
29062851 |
T |
|
| Q |
401 |
aaagtgacttgtttagtggccatttcaattttcatttgtgatgatg |
446 |
Q |
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| T |
29062850 |
aaagtgacttgtttagtggccatttcaattttcatttgtgatgatg |
29062805 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 203 - 246
Target Start/End: Original strand, 52287741 - 52287784
Alignment:
| Q |
203 |
aggtgaagagggaggagttttcctttgtagaagagatcatcagc |
246 |
Q |
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|||||||| ||||||||||||||||||||||| || |||||||| |
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| T |
52287741 |
aggtgaagggggaggagttttcctttgtagaaaagctcatcagc |
52287784 |
T |
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