View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1511_low_4 (Length: 836)
Name: NF1511_low_4
Description: NF1511
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1511_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 755; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 755; E-Value: 0
Query Start/End: Original strand, 9 - 819
Target Start/End: Original strand, 41030236 - 41031047
Alignment:
| Q |
9 |
attattctccctgcctctcatacaacactgcaactattttgtttattcttcacaaattccatggcctctgtttgcatatccaattctgttaataacaaaa |
108 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41030236 |
attattctccctgcctctcatacaacactgcaactattttgtttattcttcacaaattccatggcctctgtttgcatatccaattctgttaataacaaaa |
41030335 |
T |
|
| Q |
109 |
ttattccgattagaccaaccttcacaaacctctacaagtggccagaatcagaagtagaatttgtgaagactatgaactcaaacaattatcgtgacagagt |
208 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41030336 |
ttattccgattagaccaaacttcacaaacctctacaagtggccagaatcagaagtagaatttgtgaagactatgaactcaaacaattatcgtgacagagt |
41030435 |
T |
|
| Q |
209 |
tgaagttgatagcctctcctgcaggcaagtgtacctgaggagctacaaattctccaggaagaaattgagtgtaaccgagaagaccataaaatatttcagc |
308 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41030436 |
tgaagttgatagcctctcctgcaggcaagtgtacctgaggagctacaaattctccaggaagaaattgagtgtaaccgagaagaccataaaatatttcagc |
41030535 |
T |
|
| Q |
309 |
agtgtaaaagagagtgtgatttgtgctagcaatatattatattgtaatagtaagggtaatcgtaagattcttgggagggctaagcatatcactcatgctg |
408 |
Q |
| |
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||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
41030536 |
agtttaaaagagagtgtgatttgtgctagcaatatattatgttgtaatagtaagggtaatcgtaagattcctgggagggctaagcatatcactcatgctg |
41030635 |
T |
|
| Q |
409 |
ctgtgtcagtctaccataggttgctttctcgatctgataaggtccatgtggctcgtcacgatttctaatgttgcgtagttgtttgtttttgtggtggatc |
508 |
Q |
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| T |
41030636 |
ctgtgtcagtctaccataggttgctttctcgatctgataaggtccatgtggctcgtcacgatttctaatgctgcgtagttgtttgtttttgtggtggatc |
41030735 |
T |
|
| Q |
509 |
agtttccgatacgcataaggatc-aagctatagtttgtagtttctattaaatcacggttgattggcatatgaacgcgagtatagtgagtgtggaactagt |
607 |
Q |
| |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41030736 |
agtttccgatacgcataaggatcaaagctatagtttgtagtttctattaaatcactgttgattggcatatgaacgcgagtatagtgagtgtggaactagt |
41030835 |
T |
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| Q |
608 |
gaaatcaaacatagaggctatcatacattttctcctttaatatgtgcaagctatatttacacttacaagttatagtatctttctttcttgtaacctcnnn |
707 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41030836 |
gaaatcaaacatagaggctatcatacattttctcctttaatatgtgcaagctatatttacacttacaagttatagtatctttctttcttgtaacctcttt |
41030935 |
T |
|
| Q |
708 |
nnnnaaagtgaaataaatgtttgcttgcttttagttaagcatagtaatattaatattacagttgttctcttctttaatattcatgacacttgaataaaaa |
807 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
41030936 |
ttttaaagtgaaataaatgtttgcttgcttttagttaagcatagtaatattaatattacagttgttctcttctttaatattcatgagacttgaataaaaa |
41031035 |
T |
|
| Q |
808 |
ctagctctacct |
819 |
Q |
| |
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|||||||||||| |
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| T |
41031036 |
ctagctctacct |
41031047 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 162; E-Value: 5e-86
Query Start/End: Original strand, 56 - 635
Target Start/End: Original strand, 41035879 - 41036450
Alignment:
| Q |
56 |
cttcacaaattccatggcctctgtttgcatatccaattctgttaataacaa-aat--tattccgattagaccaaccttcacaaacctctacaagtggcca |
152 |
Q |
| |
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|||||||| ||||||||| ||||||||||||||||||||||| |||| ||| ||| |||||| ||||| ||||||||| ||||||||| || ||||| |
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| T |
41035879 |
cttcacaagttccatggcttctgtttgcatatccaattctgtcaataccaacaatggtattccaattaggccaaccttcgtaaacctctataaatggcct |
41035978 |
T |
|
| Q |
153 |
gaat---cagaagtagaatttgtgaagactatgaactcaaacaattatcgtgacagagttgaagttgatagcctctcctgcaggcaagtgtacctgagga |
249 |
Q |
| |
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|||| |||| ||||||||||||||||||||||||| || ||||||||||| ||| |||||||||||| ||||| ||||||||| |||| | |||| |
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| T |
41035979 |
gaataatcagacgtagaatttgtgaagactatgaactgtaaaaattatcgtgatggagctgaagttgatagtctctcttgcaggcaaatgtatttcagga |
41036078 |
T |
|
| Q |
250 |
gctacaaattctccaggaagaaattgagtgtaaccgagaagaccataaaatatttcagcagtgtaaaagagagtgtgatttgtgctagcaatatattata |
349 |
Q |
| |
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||||||||||||| ||||||||||| ||| | || | ||||| |||||||| |||||| |||||||| ||| ||||| ||||||| ||||||| |||| | |
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| T |
41036079 |
gctacaaattctcaaggaagaaattaagtatcactgggaagagcataaaatgtttcagaagtgtaaaggagggtgtggtttgtgccagcaatagattaaa |
41036178 |
T |
|
| Q |
350 |
ttgtaatagtaagggtaatcgtaagattcttgggagggctaagcatatcactcatgctgctgtgtcagtctaccataggttgctttctcgatctgataag |
449 |
Q |
| |
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| ||||| |||||||||| |||||||||| |||| |||| ||||||||||||||||||||||| ||| ||||||||||| ||||||||| |
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| T |
41036179 |
tcataatattaagggtaattgtaagattctaggga---------atattactcatgctgctgtgtcagtctattgtagattgctttctcggtctgataag |
41036269 |
T |
|
| Q |
450 |
gtccatgtggctcgtcacgatttctaatgttgcgtagttgtttgtttttgtggtggatcagtttccgatacgcataaggatc-aagctatagtttgtagt |
548 |
Q |
| |
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||||| |||||||||| |||||||| |||| | || |||| |||||| ||| ||||| | ||| ||| | |||||||| |||| || ||| |||| |
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| T |
41036270 |
gtccacatggctcgtcatgatttctattgtt---tcgtggtttctttttgcggtagatcactgtccaatatgtgtaaggatcaaagcagtattttatagt |
41036366 |
T |
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| Q |
549 |
ttctattaaatcacggttgattggcatatgaacgcgagtatagtgagtgtggaactagtgaaatcaaacatagaggctatcatacat |
635 |
Q |
| |
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|||| ||||||||| || |||||||||||||| || || |||| |||||| || |||||| ||||||| |||||||||||||| |
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| T |
41036367 |
ttctgttaaatcacagtcgattggcatatgaatgcaagaatagcgagtgtaga---tgtgaaactaaacatataggctatcatacat |
41036450 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 360 - 497
Target Start/End: Original strand, 41044675 - 41044816
Alignment:
| Q |
360 |
aagggtaatcgtaagattcttgggagggctaagcatatcactcatgctgctgtgtcag----tctaccataggttgctttctcgatctgataaggtccat |
455 |
Q |
| |
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||||||||| |||||||||| |||| |||||||||| |||||||||||| |||||||| | | ||||| ||| ||||||||||||||||||| ||| |
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| T |
41044675 |
aagggtaattgtaagattctagggaaggctaagcatgtcactcatgctgttgtgtcagtatttatttcatagcttgttttctcgatctgataaggttcat |
41044774 |
T |
|
| Q |
456 |
gtggctcgtcacgatttctaatgttgcgtagttgtttgtttt |
497 |
Q |
| |
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|||||| | | ||||||||||||||| | ||||||||||| |
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| T |
41044775 |
gtggcttgctatgatttctaatgttgcacacttgtttgtttt |
41044816 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 68 - 268
Target Start/End: Complemental strand, 40637036 - 40636839
Alignment:
| Q |
68 |
catggcctctgtttgcatatccaattctgttaataacaaaattattccgattagaccaaccttcacaaacctctacaagtggccagaatcagaagtagaa |
167 |
Q |
| |
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|||||| ||| |||| ||||||||| ||| || ||| ||| |||| | ||| | ||||||||| ||||| | ||||| | ||| ||| ||| ||||| |
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| T |
40637036 |
catggcttctatttgtgtatccaattgtgtcaacaaccaaagtatttccattcggccaaccttcgcaaacatatacaaatcaccaacatctgaaatagaa |
40636937 |
T |
|
| Q |
168 |
tttgtgaagactatgaactcaaacaattatcgtgacagagttgaagttgatagcctctcctgcaggcaagtgtacctgaggagctacaaattctccagga |
267 |
Q |
| |
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||||||||||||| ||||| ||| |||||| | | |||||||| ||||| |||||| ||||||||| |||| |||||||||| | |||||| |||| |
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| T |
40636936 |
tttgtgaagacta--aactctaacgattatcataaaggagttgaaattgatggcctct-ttgcaggcaaatgtatttgaggagctaaatattctcaagga |
40636840 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 131 - 160
Target Start/End: Original strand, 29016349 - 29016378
Alignment:
| Q |
131 |
cacaaacctctacaagtggccagaatcaga |
160 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
29016349 |
cacaaacctctacaagtggccagaatcaga |
29016378 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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